Variant report

Variant	rs9895237
Chromosome Location	chr17:37902830-37902831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37872097..37874439-chr17:37901648..37904546,2	K562	blood:

Variant related genes	Relation type
ENSG00000141736	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13341681	1.00[AMR][1000 genomes]
rs13380812	1.00[AMR][1000 genomes]
rs28407584	1.00[AMR][1000 genomes]
rs28409251	1.00[AMR][1000 genomes]
rs28432878	1.00[AMR][1000 genomes]
rs28464000	1.00[AMR][1000 genomes]
rs28494476	1.00[AMR][1000 genomes]
rs28498893	1.00[AMR][1000 genomes]
rs28505218	1.00[AMR][1000 genomes]
rs28627663	1.00[AMR][1000 genomes]
rs28661251	1.00[AMR][1000 genomes]
rs28673180	1.00[AMR][1000 genomes]
rs28714172	1.00[AMR][1000 genomes]
rs28882824	1.00[AMR][1000 genomes]
rs61737968	1.00[AMR][1000 genomes]
rs9890508	1.00[AMR][1000 genomes]
rs9890819	1.00[AMR][1000 genomes]
rs9893628	1.00[AMR][1000 genomes]
rs9893933	1.00[AMR][1000 genomes]
rs9896961	1.00[AMR][1000 genomes]
rs9897451	1.00[AMR][1000 genomes]
rs9897847	1.00[AMR][1000 genomes]
rs9899977	1.00[AMR][1000 genomes]
rs9900885	1.00[AMR][1000 genomes]
rs9911163	1.00[AMR][1000 genomes]
rs9913746	1.00[AMR][1000 genomes]
rs9914556	1.00[AMR][1000 genomes]
rs9916301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1056234	chr17:37862605-37909988	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv908219	chr17:37880265-37917633	Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37897200-37909400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:37897800-37906400	Weak transcription	Right Ventricle	heart
3	chr17:37897800-37910000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:37898000-37905200	Strong transcription	Fetal Intestine Small	intestine
5	chr17:37898200-37903600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr17:37898400-37904400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr17:37898400-37906000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:37898600-37903400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:37898600-37904000	Strong transcription	Liver	Liver
10	chr17:37898600-37904400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
11	chr17:37898600-37904400	Strong transcription	Fetal Intestine Large	intestine
12	chr17:37898800-37904200	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr17:37898800-37904400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:37899000-37903000	Strong transcription	Duodenum Mucosa	Duodenum
15	chr17:37899000-37903200	Strong transcription	HMEC	breast
16	chr17:37899000-37903400	Strong transcription	Colonic Mucosa	Colon
17	chr17:37899000-37903800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:37899000-37904000	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr17:37899000-37904200	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr17:37899000-37904400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr17:37899000-37904400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr17:37899200-37904200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr17:37899400-37904000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:37899400-37904200	Strong transcription	Esophagus	oesophagus
25	chr17:37899400-37904400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:37899400-37904400	Strong transcription	Gastric	stomach
27	chr17:37899400-37904800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr17:37899400-37906400	Weak transcription	Spleen	Spleen
29	chr17:37899600-37904400	Strong transcription	Pancreas	Pancrea
30	chr17:37899800-37904200	Strong transcription	HepG2	liver
31	chr17:37900600-37903400	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr17:37901000-37904400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr17:37901200-37903400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr17:37901200-37903800	Strong transcription	Placenta	Placenta
35	chr17:37901200-37904200	Strong transcription	Fetal Stomach	stomach
36	chr17:37901200-37906200	Weak transcription	Stomach Mucosa	stomach
37	chr17:37901400-37906400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr17:37901600-37906400	Weak transcription	A549	lung
39	chr17:37901600-37908400	Weak transcription	Fetal Kidney	kidney
40	chr17:37902200-37903000	Weak transcription	HUVEC	blood vessel
41	chr17:37902200-37906400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:37902200-37906400	Weak transcription	Lung	lung
43	chr17:37902200-37910000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr17:37902400-37906400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr17:37902600-37906400	Weak transcription	Hela-S3	cervix
46	chr17:37902800-37903400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr17:37902800-37904000	Weak transcription	NHEK	skin
48	chr17:37902800-37908200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links