Variant report

Variant	rs28407584
Chromosome Location	chr17:38001095-38001096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37993320..37996437-chr17:37998688..38001239,3	K562	blood:

Variant related genes	Relation type
ENSG00000226117	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13341681	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13380812	1.00[AMR][1000 genomes]
rs28409251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432878	1.00[AMR][1000 genomes]
rs28464000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498893	1.00[AMR][1000 genomes]
rs28505218	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661251	1.00[AMR][1000 genomes]
rs28673180	1.00[AMR][1000 genomes]
rs28714172	1.00[AMR][1000 genomes]
rs28882824	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737968	1.00[AMR][1000 genomes]
rs62065168	1.00[AMR][1000 genomes]
rs62065210	1.00[AMR][1000 genomes]
rs9890508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9890819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893628	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893933	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9895237	1.00[AMR][1000 genomes]
rs9896961	1.00[AMR][1000 genomes]
rs9897451	1.00[AMR][1000 genomes]
rs9897847	1.00[AMR][1000 genomes]
rs9899977	1.00[AMR][1000 genomes]
rs9900885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911163	1.00[AMR][1000 genomes]
rs9913746	1.00[AMR][1000 genomes]
rs9914556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37996400-38001400	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr17:37996400-38001400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:37997400-38005000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:37997800-38001400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:37999600-38006200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr17:37999800-38002600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:37999800-38003400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:38000000-38005000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:38000000-38006000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:38000200-38003000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr17:38000200-38003800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:38000600-38001200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:38000800-38001800	Weak transcription	Primary T cells from cord blood	blood
14	chr17:38000800-38002000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr17:38000800-38003000	Weak transcription	Primary B cells from cord blood	blood
16	chr17:38000800-38017400	Weak transcription	Thymus	Thymus
17	chr17:38001000-38001200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr17:38001000-38001400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr17:38001000-38002200	Genic enhancers	GM12878-XiMat	blood
20	chr17:38001000-38003800	Weak transcription	Fetal Thymus	thymus

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