Variant report
Variant | rs9896961 |
---|---|
Chromosome Location | chr17:38030613-38030614 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:38027089..38030727-chr17:38135584..38137903,4 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000108344 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs13341681 | 1.00[AMR][1000 genomes] |
rs13380812 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28407584 | 1.00[AMR][1000 genomes] |
rs28409251 | 1.00[AMR][1000 genomes] |
rs28432878 | 1.00[AMR][1000 genomes] |
rs28464000 | 1.00[AMR][1000 genomes] |
rs28494476 | 1.00[AMR][1000 genomes] |
rs28498893 | 1.00[AMR][1000 genomes] |
rs28505218 | 1.00[AMR][1000 genomes] |
rs28627663 | 1.00[AMR][1000 genomes] |
rs28661251 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28673180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28714172 | 1.00[AMR][1000 genomes] |
rs28882824 | 1.00[AMR][1000 genomes] |
rs61737968 | 1.00[AMR][1000 genomes] |
rs62065168 | 1.00[AMR][1000 genomes] |
rs62065210 | 1.00[AMR][1000 genomes] |
rs9890508 | 1.00[AMR][1000 genomes] |
rs9890819 | 1.00[AMR][1000 genomes] |
rs9893628 | 1.00[AMR][1000 genomes] |
rs9893933 | 1.00[AMR][1000 genomes] |
rs9895237 | 1.00[AMR][1000 genomes] |
rs9897451 | 1.00[AMR][1000 genomes] |
rs9897847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9899977 | 1.00[AMR][1000 genomes] |
rs9900885 | 1.00[AMR][1000 genomes] |
rs9911163 | 1.00[AMR][1000 genomes] |
rs9913746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9914556 | 1.00[AMR][1000 genomes] |
rs9916301 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1064787 | chr17:37892843-38054410 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
2 | nsv543342 | chr17:37892843-38054410 | Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
3 | esv1795575 | chr17:37974075-38041762 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
No data |