Variant report

Variant	rs28505218
Chromosome Location	chr17:37991289-37991290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37777900..37778761-chr17:37991112..37991981,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13341681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13380812	1.00[AMR][1000 genomes]
rs28407584	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28433533	0.87[AFR][1000 genomes]
rs28464000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498893	1.00[AMR][1000 genomes]
rs28627663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661251	1.00[AMR][1000 genomes]
rs28673180	1.00[AMR][1000 genomes]
rs28714172	1.00[AMR][1000 genomes]
rs28882824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737968	1.00[AMR][1000 genomes]
rs62065168	1.00[AMR][1000 genomes]
rs62065210	1.00[AMR][1000 genomes]
rs9890508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9890819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9895237	1.00[AMR][1000 genomes]
rs9896961	1.00[AMR][1000 genomes]
rs9897451	1.00[AMR][1000 genomes]
rs9897847	1.00[AMR][1000 genomes]
rs9899977	1.00[AMR][1000 genomes]
rs9900885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911163	1.00[AMR][1000 genomes]
rs9913746	1.00[AMR][1000 genomes]
rs9914556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37979400-37991800	Weak transcription	Gastric	stomach
2	chr17:37982600-37993800	Strong transcription	Primary B cells from cord blood	blood
3	chr17:37984400-37993400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr17:37985000-37994800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:37985000-37996200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr17:37985600-37997800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:37985800-37991600	Weak transcription	Thymus	Thymus
8	chr17:37985800-37994800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:37986600-37994400	Weak transcription	Primary T cells from cord blood	blood
10	chr17:37986600-37994400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:37987200-37991800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:37988200-37991800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:37988600-37994400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:37990200-37992800	ZNF genes & repeats	GM12878-XiMat	blood
15	chr17:37990800-37992600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr17:37990800-37992800	ZNF genes & repeats	Fetal Thymus	thymus
17	chr17:37991000-37991400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr17:37991000-37991800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:37991000-37992200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr17:37991000-37992600	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr17:37991000-37992800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr17:37991000-37993200	Genic enhancers	Primary B cells from peripheral blood	blood
23	chr17:37991200-37992000	ZNF genes & repeats	Spleen	Spleen
24	chr17:37991200-37992800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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