Variant report

Variant	rs9893628
Chromosome Location	chr17:37924513-37924514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:37924252-37934637	GM12891	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37894301..37895918-chr17:37923821..37926664,2	MCF-7	breast:
2	chr17:37909376..37912567-chr17:37922952..37926689,4	MCF-7	breast:
3	chr17:37880907..37883423-chr17:37923415..37926251,2	MCF-7	breast:
4	chr17:37924386..37926386-chr17:37944226..37946350,2	MCF-7	breast:
5	chr17:37885265..37887595-chr17:37922409..37924932,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000264198	TF binding region
ENSG00000141738	Chromatin interaction
ENSG00000141741	Chromatin interaction
ENSG00000265178	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13341681	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13380812	1.00[AMR][1000 genomes]
rs28407584	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28433533	0.87[AFR][1000 genomes]
rs28464000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498893	1.00[AMR][1000 genomes]
rs28505218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661251	1.00[AMR][1000 genomes]
rs28673180	1.00[AMR][1000 genomes]
rs28714172	1.00[AMR][1000 genomes]
rs28882824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737968	1.00[AMR][1000 genomes]
rs62065168	1.00[AMR][1000 genomes]
rs9890508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9890819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893933	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9895237	1.00[AMR][1000 genomes]
rs9896961	1.00[AMR][1000 genomes]
rs9897451	1.00[AMR][1000 genomes]
rs9897847	1.00[AMR][1000 genomes]
rs9899977	1.00[AMR][1000 genomes]
rs9900885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901670	1.00[YRI][hapmap]
rs9911163	1.00[AMR][1000 genomes]
rs9913746	1.00[AMR][1000 genomes]
rs9914556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37912800-37927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:37913600-37926400	Genic enhancers	Fetal Thymus	thymus
4	chr17:37915800-37926000	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr17:37917000-37925800	Genic enhancers	Thymus	Thymus
6	chr17:37918400-37929400	Weak transcription	Colonic Mucosa	Colon
7	chr17:37919200-37926000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr17:37920000-37930000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:37920800-37931000	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr17:37921000-37926600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:37921200-37926200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr17:37922200-37925800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:37922200-37926800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:37922600-37926200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:37922600-37928400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr17:37922800-37926200	Genic enhancers	Primary T cells from cord blood	blood
17	chr17:37922800-37926600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr17:37923000-37925000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:37923000-37928600	Genic enhancers	Primary B cells from cord blood	blood
20	chr17:37923200-37929200	Weak transcription	Spleen	Spleen
21	chr17:37923800-37924600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr17:37923800-37924800	Weak transcription	Small Intestine	intestine
23	chr17:37923800-37925400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr17:37924200-37924800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr17:37924200-37928600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr17:37924400-37924800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr17:37924400-37929000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood

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