Variant report

Variant	rs28409251
Chromosome Location	chr17:38055977-38055978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38054884..38058722-chr17:38059385..38063042,6	K562	blood:

Variant related genes	Relation type
ENSG00000073605	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13341681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13380812	1.00[AMR][1000 genomes]
rs28407584	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28433533	0.87[AFR][1000 genomes]
rs28464000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498893	1.00[AMR][1000 genomes]
rs28505218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661251	1.00[AMR][1000 genomes]
rs28673180	1.00[AMR][1000 genomes]
rs28714172	1.00[AMR][1000 genomes]
rs28882824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737968	1.00[AMR][1000 genomes]
rs62065168	1.00[AMR][1000 genomes]
rs62065210	1.00[AMR][1000 genomes]
rs9890508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9890819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9895237	1.00[AMR][1000 genomes]
rs9896961	1.00[AMR][1000 genomes]
rs9897451	1.00[AMR][1000 genomes]
rs9897847	1.00[AMR][1000 genomes]
rs9899977	1.00[AMR][1000 genomes]
rs9900885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911163	1.00[AMR][1000 genomes]
rs9913746	1.00[AMR][1000 genomes]
rs9914556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38046000-38059800	Weak transcription	Liver	Liver
2	chr17:38047400-38059200	Weak transcription	Primary T cells from cord blood	blood
3	chr17:38049200-38059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:38051000-38059000	Weak transcription	Thymus	Thymus
6	chr17:38051200-38059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:38051400-38059400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:38051400-38059800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr17:38051600-38059000	Weak transcription	Fetal Thymus	thymus
10	chr17:38051600-38059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:38052000-38059800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr17:38052400-38059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:38052600-38074200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr17:38052800-38058800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:38053000-38061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:38053200-38061000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr17:38054200-38057600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:38055400-38059200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr17:38055600-38056000	Weak transcription	Placenta	Placenta
20	chr17:38055600-38077400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:38055800-38059800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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