The 2.0 version of rSNPBase

Variant report

Variant rs9890819
Chromosome Location chr17:38062987-38062988
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38049200-38075400 Weak transcription Brain Cingulate Gyrus brain
2 chr17:38052600-38074200 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr17:38055600-38077400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr17:38056200-38065400 Weak transcription Placenta Placenta
5 chr17:38056800-38064000 Weak transcription Brain Angular Gyrus brain
6 chr17:38056800-38074600 Weak transcription NH-A brain
7 chr17:38057000-38068800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr17:38057200-38074400 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr17:38057400-38075400 Weak transcription HSMM muscle
10 chr17:38057600-38076600 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr17:38057800-38077600 Weak transcription Muscle Satellite Cultured Cells --
12 chr17:38058000-38065200 Weak transcription Placenta Amnion Placenta Amnion
13 chr17:38058000-38067600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr17:38058000-38074600 Weak transcription Left Ventricle heart
15 chr17:38058200-38076200 Weak transcription Fetal Lung lung
16 chr17:38058200-38077800 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr17:38058400-38075400 Weak transcription H9 Cell Line embryonic stem cell
18 chr17:38058600-38075400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr17:38058600-38077400 Weak transcription Colon Smooth Muscle Colon
20 chr17:38058800-38071800 Weak transcription Stomach Mucosa stomach
21 chr17:38059000-38065200 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr17:38059000-38070400 Strong transcription Fetal Stomach stomach
23 chr17:38059000-38071000 Strong transcription Thymus Thymus
24 chr17:38059000-38082400 Weak transcription Psoas Muscle Psoas
25 chr17:38059200-38070600 Strong transcription Sigmoid Colon Sigmoid Colon
26 chr17:38059200-38075400 Weak transcription Brain Hippocampus Middle brain
27 chr17:38059400-38063000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr17:38059400-38074000 Weak transcription Small Intestine intestine
29 chr17:38059600-38065000 Weak transcription Lung lung
30 chr17:38059600-38067800 Weak transcription Rectal Smooth Muscle rectum
31 chr17:38059800-38063600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr17:38059800-38070800 Strong transcription Duodenum Mucosa Duodenum
33 chr17:38059800-38077200 Weak transcription Esophagus oesophagus
34 chr17:38060000-38066600 Weak transcription Brain Substantia Nigra brain
35 chr17:38060000-38077400 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr17:38060200-38063000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr17:38060200-38063000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr17:38060200-38065000 Weak transcription Osteobl bone
39 chr17:38060200-38065200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr17:38060200-38065800 Weak transcription Primary B cells from peripheral blood blood
41 chr17:38060200-38071400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr17:38060400-38064000 Weak transcription Fetal Muscle Leg muscle
43 chr17:38060400-38065200 Weak transcription H1 Cell Line embryonic stem cell
44 chr17:38060400-38065400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr17:38060400-38069600 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr17:38060400-38069800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr17:38060400-38070800 Strong transcription Rectal Mucosa Donor 31 rectum
48 chr17:38060400-38071200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
49 chr17:38060400-38081600 Weak transcription Fetal Brain Male brain
50 chr17:38060600-38063400 Strong transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015