Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:56302994..56305596-chr6:56305706..56307687,2	MCF-7	breast:
2	chr6:56300059..56302914-chr6:56304069..56306007,3	MCF-7	breast:
3	chr6:56302578..56305844-chr6:56326114..56330070,4	MCF-7	breast:
4	chr6:56247738..56250356-chr6:56304271..56306407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28715704	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56945645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59464927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6900978	0.89[ASN][1000 genomes]
rs6901338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6914907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6914935	1.00[ASN][1000 genomes]
rs73745843	1.00[ASN][1000 genomes]
rs7756839	0.91[AFR][1000 genomes]
rs7761984	0.89[ASN][1000 genomes]
rs9296845	0.82[ASN][1000 genomes]
rs9464387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9475696	1.00[ASN][1000 genomes]
rs9475697	1.00[ASN][1000 genomes]
rs9475699	1.00[ASN][1000 genomes]
rs9475701	1.00[ASN][1000 genomes]
rs9475702	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56303200-56309600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:56304400-56307200	Enhancers	Fetal Intestine Large	intestine
4	chr6:56304800-56305600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:56304800-56305600	Enhancers	HMEC	breast
6	chr6:56304800-56305600	Enhancers	NHEK	skin
7	chr6:56304800-56307400	Enhancers	Fetal Intestine Small	intestine
8	chr6:56304800-56309600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:56305000-56305400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:56305000-56305800	Enhancers	Stomach Mucosa	stomach
11	chr6:56305000-56307400	Enhancers	Liver	Liver
12	chr6:56305200-56305400	Enhancers	NH-A	brain
13	chr6:56305200-56305600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:56305200-56305600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:56305200-56305600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:56305200-56305600	Enhancers	Gastric	stomach
17	chr6:56305200-56305800	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:56305200-56306000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:56305200-56306000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:56305200-56306000	Enhancers	Pancreas	Pancrea

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