Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56302783..56304567-chr6:56307682..56311074,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28507597	1.00[ASN][1000 genomes]
rs28715704	1.00[ASN][1000 genomes]
rs3828936	1.00[CHB][hapmap]
rs56945645	1.00[ASN][1000 genomes]
rs59464927	0.89[ASN][1000 genomes]
rs6900978	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6901338	0.89[ASN][1000 genomes]
rs6914907	1.00[ASN][1000 genomes]
rs6917087	1.00[JPT][hapmap]
rs6941846	1.00[JPT][hapmap]
rs73745843	1.00[ASN][1000 genomes]
rs7761984	0.89[ASN][1000 genomes]
rs9296845	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9464387	1.00[ASN][1000 genomes]
rs9475696	1.00[ASN][1000 genomes]
rs9475697	1.00[ASN][1000 genomes]
rs9475698	1.00[JPT][hapmap]
rs9475699	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9475701	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9475702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9475710	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56303200-56309600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:56304800-56309600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:56305600-56313000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:56305600-56315800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:56305600-56318600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:56305600-56319600	Weak transcription	HMEC	breast
8	chr6:56305800-56309600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:56306000-56309000	Weak transcription	Pancreas	Pancrea
10	chr6:56306600-56319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:56307200-56309600	Weak transcription	Aorta	Aorta
12	chr6:56307400-56313000	Weak transcription	Ovary	ovary
13	chr6:56308000-56308400	Enhancers	Pancreatic Islets	Pancreatic Islet

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