Variant report
| Variant | rs28715704 |
|---|---|
| Chromosome Location | chr6:56298830-56298831 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:56298331..56299890-chr6:56404895..56406980,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151914 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs28507597 | 0.98[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56945645 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59464927 | 0.86[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6900978 | 0.89[ASN][1000 genomes] |
| rs6901338 | 0.85[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6914907 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6914935 | 1.00[ASN][1000 genomes] |
| rs73745843 | 1.00[ASN][1000 genomes] |
| rs7756839 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7761984 | 1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9296845 | 0.82[ASN][1000 genomes] |
| rs9464387 | 0.98[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9475696 | 1.00[ASN][1000 genomes] |
| rs9475697 | 1.00[ASN][1000 genomes] |
| rs9475699 | 1.00[ASN][1000 genomes] |
| rs9475701 | 1.00[ASN][1000 genomes] |
| rs9475702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9475710 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830666 | chr6:56243743-56419599 | Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:56298400-56299600 | Weak transcription | Fetal Intestine Large | intestine |
