Variant report

Variant	rs9475696
Chromosome Location	chr6:56297150-56297151
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28507597	1.00[ASN][1000 genomes]
rs28715704	1.00[ASN][1000 genomes]
rs56945645	1.00[ASN][1000 genomes]
rs59464927	0.89[ASN][1000 genomes]
rs6900978	0.89[ASN][1000 genomes]
rs6901338	0.89[ASN][1000 genomes]
rs6914907	1.00[ASN][1000 genomes]
rs6914935	1.00[ASN][1000 genomes]
rs73745843	1.00[ASN][1000 genomes]
rs7761984	0.89[ASN][1000 genomes]
rs9296845	0.82[ASN][1000 genomes]
rs9464387	1.00[ASN][1000 genomes]
rs9475697	1.00[ASN][1000 genomes]
rs9475699	1.00[ASN][1000 genomes]
rs9475701	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv965727	chr6:56294729-56298343	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56295800-56297200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:56296800-56297600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:56297000-56297200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:56297000-56297800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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