Variant report

Variant	rs9475699
Chromosome Location	chr6:56302054-56302055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28507597	1.00[ASN][1000 genomes]
rs28715704	1.00[ASN][1000 genomes]
rs56945645	1.00[ASN][1000 genomes]
rs59464927	0.89[ASN][1000 genomes]
rs6900978	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6901338	0.89[ASN][1000 genomes]
rs6914907	1.00[ASN][1000 genomes]
rs6914935	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73745843	1.00[ASN][1000 genomes]
rs7761984	0.89[ASN][1000 genomes]
rs9296845	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9464387	1.00[ASN][1000 genomes]
rs9475696	1.00[ASN][1000 genomes]
rs9475697	1.00[ASN][1000 genomes]
rs9475701	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56300200-56303000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:56300200-56303600	Enhancers	Liver	Liver
3	chr6:56300600-56303000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:56301000-56304400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:56301000-56305200	Weak transcription	Pancreas	Pancrea
6	chr6:56301600-56303600	Enhancers	Hela-S3	cervix
7	chr6:56301800-56303200	Enhancers	HMEC	breast
8	chr6:56301800-56303200	Enhancers	NHEK	skin
9	chr6:56302000-56302400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:56302000-56302400	Enhancers	NHDF-Ad	bronchial
11	chr6:56302000-56302800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:56302000-56303000	Enhancers	Colon Smooth Muscle	Colon
13	chr6:56302000-56303000	Enhancers	Stomach Mucosa	stomach
14	chr6:56302000-56303200	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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