Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:56298845..56301782-chr6:56308570..56311442,2	MCF-7	breast:
2	chr6:56308676..56311120-chr6:56312464..56314114,2	MCF-7	breast:
3	chr6:56302783..56304567-chr6:56307682..56311074,3	K562	blood:

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28507597	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28715704	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59464927	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6900978	0.89[ASN][1000 genomes]
rs6901338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6914907	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6914935	1.00[ASN][1000 genomes]
rs73745843	1.00[ASN][1000 genomes]
rs7756839	0.86[AFR][1000 genomes]
rs7761984	0.89[ASN][1000 genomes]
rs9296845	0.82[ASN][1000 genomes]
rs9464387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9475696	1.00[ASN][1000 genomes]
rs9475697	1.00[ASN][1000 genomes]
rs9475699	1.00[ASN][1000 genomes]
rs9475701	1.00[ASN][1000 genomes]
rs9475702	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56304200-56314800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56305600-56313000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:56305600-56315800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:56305600-56318600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:56305600-56319600	Weak transcription	HMEC	breast
6	chr6:56306600-56319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56307400-56313000	Weak transcription	Ovary	ovary
8	chr6:56308600-56311600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:56309000-56321000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:56309400-56322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:56309600-56310400	Enhancers	Left Ventricle	heart
13	chr6:56309600-56310600	Enhancers	Colon Smooth Muscle	Colon
14	chr6:56309600-56311600	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:56309600-56311800	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:56309800-56315000	Weak transcription	HSMM	muscle
17	chr6:56310000-56311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:56310000-56315000	Weak transcription	Aorta	Aorta
19	chr6:56310200-56310600	Weak transcription	HepG2	liver
20	chr6:56310200-56313400	Weak transcription	Fetal Heart	heart
21	chr6:56310200-56313400	Weak transcription	Right Atrium	heart

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