Variant report

Variant	rs28517374
Chromosome Location	chr7:122269693-122269694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228901	1.00[AMR][1000 genomes]
rs10229791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238335	1.00[AMR][1000 genomes]
rs10238929	1.00[AMR][1000 genomes]
rs10243551	1.00[AMR][1000 genomes]
rs10244187	1.00[AMR][1000 genomes]
rs10248746	1.00[AMR][1000 genomes]
rs10250037	1.00[AMR][1000 genomes]
rs10254479	1.00[AMR][1000 genomes]
rs10257455	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257593	1.00[AMR][1000 genomes]
rs10263672	1.00[AMR][1000 genomes]
rs10267961	1.00[AMR][1000 genomes]
rs10274143	1.00[AMR][1000 genomes]
rs10278021	1.00[AMR][1000 genomes]
rs6944720	1.00[AMR][1000 genomes]
rs6949494	1.00[AMR][1000 genomes]
rs6963572	1.00[AMR][1000 genomes]
rs7792270	1.00[AMR][1000 genomes]
rs7798392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7810196	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122254800-122271400	Weak transcription	Left Ventricle	heart
2	chr7:122268200-122270800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:122268400-122269800	Enhancers	NHDF-Ad	bronchial
4	chr7:122268400-122270000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:122268600-122269800	Enhancers	Osteobl	bone
6	chr7:122268800-122269800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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