Variant report

Variant	rs28517694
Chromosome Location	chr2:210464072-210464073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10179315	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10203283	1.00[EUR][1000 genomes]
rs1039826	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12694184	0.85[EUR][1000 genomes]
rs12694187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13008317	0.92[EUR][1000 genomes]
rs13382265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13404929	0.92[EUR][1000 genomes]
rs13412699	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432745	0.85[EUR][1000 genomes]
rs13432941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1396778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509467	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509471	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843236	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1828281	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1949041	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1962197	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1967262	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2063292	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663644	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663656	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2710476	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs288072	0.92[EUR][1000 genomes]
rs288075	0.85[EUR][1000 genomes]
rs288076	0.85[EUR][1000 genomes]
rs288077	0.85[EUR][1000 genomes]
rs288080	0.85[EUR][1000 genomes]
rs288085	0.85[EUR][1000 genomes]
rs35568286	0.85[EUR][1000 genomes]
rs56676438	0.85[EUR][1000 genomes]
rs60751322	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435533	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6752060	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71420765	0.92[EUR][1000 genomes]
rs7566048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7603837	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9288411	0.85[EUR][1000 genomes]
rs992991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210456400-210464400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210457000-210465200	Weak transcription	Fetal Brain Female	brain
3	chr2:210457000-210465400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:210457400-210465000	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210460600-210477400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:210461800-210469400	Weak transcription	Brain Angular Gyrus	brain
7	chr2:210463000-210464200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:210463000-210464200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210464000-210464600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210464000-210465000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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