Variant report

Variant	rs6435533
Chromosome Location	chr2:210483527-210483528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10179315	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10203283	1.00[EUR][1000 genomes]
rs1039826	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12694184	0.85[EUR][1000 genomes]
rs12694187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13008317	0.92[EUR][1000 genomes]
rs13382265	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13404929	0.92[EUR][1000 genomes]
rs13412699	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423655	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432745	0.85[EUR][1000 genomes]
rs13432941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1396778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509467	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509471	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843236	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1828281	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1949041	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1962197	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1967262	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2063292	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663644	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663656	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2710476	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28517694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs288072	0.92[EUR][1000 genomes]
rs288075	0.85[EUR][1000 genomes]
rs288076	0.85[EUR][1000 genomes]
rs288077	0.85[EUR][1000 genomes]
rs288080	0.85[EUR][1000 genomes]
rs288085	0.85[EUR][1000 genomes]
rs35568286	0.85[EUR][1000 genomes]
rs56676438	0.85[EUR][1000 genomes]
rs60751322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6752060	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71420765	0.92[EUR][1000 genomes]
rs7566048	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7603837	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9288411	0.85[EUR][1000 genomes]
rs992991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
2	chr2:210479200-210484600	Weak transcription	Fetal Brain Male	brain
3	chr2:210480000-210493200	Weak transcription	Brain Germinal Matrix	brain
4	chr2:210481000-210484400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:210481000-210486400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210481000-210493400	Weak transcription	Pancreas	Pancrea
7	chr2:210481000-210500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:210481200-210484200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:210481400-210493600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210481600-210484600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:210481600-210487800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:210482400-210484400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210482600-210484400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:210483400-210484400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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