Variant report

Variant	rs2851807
Chromosome Location	chr4:160382352-160382353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10004927	0.86[ASN][1000 genomes]
rs10028453	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13111914	0.82[ASN][1000 genomes]
rs13114173	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13150216	0.86[ASN][1000 genomes]
rs1893951	0.86[ASN][1000 genomes]
rs2707658	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707671	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2707672	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707691	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707702	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707703	0.86[ASN][1000 genomes]
rs2707707	0.86[ASN][1000 genomes]
rs2707709	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707718	0.82[ASN][1000 genomes]
rs2707720	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707724	0.82[ASN][1000 genomes]
rs2707725	0.82[ASN][1000 genomes]
rs2707727	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851773	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851774	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851787	0.84[ASN][1000 genomes]
rs2851788	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851794	0.82[ASN][1000 genomes]
rs2851795	0.82[ASN][1000 genomes]
rs2851796	0.82[ASN][1000 genomes]
rs2851797	0.82[ASN][1000 genomes]
rs2851798	0.82[ASN][1000 genomes]
rs2851808	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851811	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851825	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851827	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851828	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851832	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2881905	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4305472	0.82[ASN][1000 genomes]
rs4428244	0.86[ASN][1000 genomes]
rs4504207	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4532192	0.82[ASN][1000 genomes]
rs4536880	0.82[ASN][1000 genomes]
rs4607165	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4690945	0.86[ASN][1000 genomes]
rs4691570	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4691575	0.82[ASN][1000 genomes]
rs6536434	0.86[ASN][1000 genomes]
rs6811450	0.82[ASN][1000 genomes]
rs6813593	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6824835	0.82[ASN][1000 genomes]
rs6848639	0.83[ASN][1000 genomes]
rs7442124	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7669190	0.84[ASN][1000 genomes]
rs9995589	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9996381	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1024453	chr4:160373221-160395135	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv523255	chr4:160374255-160388504	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368400-160390200	Weak transcription	NHEK	skin
2	chr4:160373800-160386200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160377200-160386800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:160379200-160386200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:160381600-160382400	Enhancers	Fetal Muscle Leg	muscle

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