Variant report

Variant	rs4607165
Chromosome Location	chr4:160421451-160421452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160415111..160419757-chr4:160420398..160424474,4	MCF-7	breast:
2	chr4:160419398..160423309-chr4:160425838..160430162,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251979	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10004927	1.00[ASN][1000 genomes]
rs10028453	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745247	0.91[ASN][1000 genomes]
rs13103079	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13111914	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13114173	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150216	1.00[ASN][1000 genomes]
rs1893951	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707658	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2707672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707691	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2707702	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707703	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707707	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2707709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707710	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707711	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707712	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707713	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2707714	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707716	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707718	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2707720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707724	0.96[ASN][1000 genomes]
rs2707725	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2707727	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851773	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851787	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851788	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851794	0.96[ASN][1000 genomes]
rs2851795	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2851796	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2851797	0.96[ASN][1000 genomes]
rs2851798	0.96[ASN][1000 genomes]
rs2851807	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851808	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851811	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28525346	0.93[AFR][1000 genomes]
rs2881905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305472	0.96[ASN][1000 genomes]
rs4349554	0.85[ASN][1000 genomes]
rs4428244	1.00[ASN][1000 genomes]
rs4453899	0.93[ASN][1000 genomes]
rs4473616	0.93[ASN][1000 genomes]
rs4504207	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532192	0.96[ASN][1000 genomes]
rs4536880	0.96[ASN][1000 genomes]
rs4629393	0.93[ASN][1000 genomes]
rs4690945	1.00[ASN][1000 genomes]
rs4691570	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4691575	0.96[ASN][1000 genomes]
rs6536434	1.00[ASN][1000 genomes]
rs6811450	0.96[ASN][1000 genomes]
rs6813593	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6824835	0.96[ASN][1000 genomes]
rs6848639	0.96[ASN][1000 genomes]
rs7356182	0.93[AFR][1000 genomes]
rs7442124	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656693	0.84[ASN][1000 genomes]
rs7669190	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9995589	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996381	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160416400-160421800	Enhancers	Liver	Liver
3	chr4:160417600-160424600	Weak transcription	HSMM	muscle
4	chr4:160418400-160422000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:160420000-160423400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:160420000-160423800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:160420000-160423800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:160420200-160421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:160420200-160424600	Weak transcription	Brain Germinal Matrix	brain
10	chr4:160420200-160425800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:160420200-160425800	Weak transcription	Pancreas	Pancrea
12	chr4:160421200-160422800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:160421400-160421800	Weak transcription	Fetal Brain Female	brain

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