Variant report

Variant	rs6824835
Chromosome Location	chr4:160456060-160456061
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004927	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10028453	0.96[ASN][1000 genomes]
rs10745247	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13103079	0.96[ASN][1000 genomes]
rs13111914	1.00[ASN][1000 genomes]
rs13114173	0.96[ASN][1000 genomes]
rs13150216	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1893951	0.96[ASN][1000 genomes]
rs2707658	0.86[ASN][1000 genomes]
rs2707671	0.91[ASN][1000 genomes]
rs2707672	0.89[ASN][1000 genomes]
rs2707691	0.84[ASN][1000 genomes]
rs2707702	0.87[ASN][1000 genomes]
rs2707703	0.96[ASN][1000 genomes]
rs2707707	0.96[ASN][1000 genomes]
rs2707709	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2707710	0.96[ASN][1000 genomes]
rs2707711	0.96[ASN][1000 genomes]
rs2707712	0.96[ASN][1000 genomes]
rs2707713	0.93[ASN][1000 genomes]
rs2707714	0.96[ASN][1000 genomes]
rs2707716	0.96[ASN][1000 genomes]
rs2707718	1.00[ASN][1000 genomes]
rs2707720	0.87[ASN][1000 genomes]
rs2707724	1.00[ASN][1000 genomes]
rs2707725	1.00[ASN][1000 genomes]
rs2707727	0.86[ASN][1000 genomes]
rs2851773	0.96[ASN][1000 genomes]
rs2851774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2851787	0.95[ASN][1000 genomes]
rs2851788	0.96[ASN][1000 genomes]
rs2851794	1.00[ASN][1000 genomes]
rs2851795	1.00[ASN][1000 genomes]
rs2851796	1.00[ASN][1000 genomes]
rs2851797	1.00[ASN][1000 genomes]
rs2851798	1.00[ASN][1000 genomes]
rs2851807	0.82[ASN][1000 genomes]
rs2851808	0.82[ASN][1000 genomes]
rs2851811	0.86[ASN][1000 genomes]
rs2851825	0.86[ASN][1000 genomes]
rs2851827	0.87[ASN][1000 genomes]
rs2851828	0.87[ASN][1000 genomes]
rs2851832	0.91[ASN][1000 genomes]
rs2881905	0.96[ASN][1000 genomes]
rs4305472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349554	0.88[ASN][1000 genomes]
rs4428244	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4453899	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4473616	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4504207	0.96[ASN][1000 genomes]
rs4532192	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4629393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690945	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4691570	0.81[ASN][1000 genomes]
rs4691575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536434	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6811450	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813593	0.84[ASN][1000 genomes]
rs6848639	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7442124	0.96[ASN][1000 genomes]
rs7656693	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7669190	0.95[ASN][1000 genomes]
rs9995589	0.96[ASN][1000 genomes]
rs9996381	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160433200-160458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160455000-160456400	Enhancers	Liver	Liver

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