Variant report

Variant	rs9995589
Chromosome Location	chr4:160427421-160427422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160424643..160427469-chr4:160428460..160430734,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004927	1.00[ASN][1000 genomes]
rs10028453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745247	0.91[ASN][1000 genomes]
rs13103079	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13111914	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150216	1.00[ASN][1000 genomes]
rs1893951	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707658	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707671	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2707672	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707691	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2707702	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707703	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707707	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707710	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707711	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707712	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707713	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707714	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707716	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707718	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707720	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707724	0.96[ASN][1000 genomes]
rs2707725	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707727	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851787	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851788	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851794	0.96[ASN][1000 genomes]
rs2851795	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851796	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851797	0.96[ASN][1000 genomes]
rs2851798	0.96[ASN][1000 genomes]
rs2851807	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851808	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851811	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851825	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851827	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851828	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851832	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2881905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305472	0.96[ASN][1000 genomes]
rs4349554	0.85[ASN][1000 genomes]
rs4428244	1.00[ASN][1000 genomes]
rs4453899	0.93[ASN][1000 genomes]
rs4473616	0.93[ASN][1000 genomes]
rs4504207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532192	0.96[ASN][1000 genomes]
rs4536880	0.96[ASN][1000 genomes]
rs4607165	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629393	0.93[ASN][1000 genomes]
rs4690945	1.00[ASN][1000 genomes]
rs4691570	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4691575	0.96[ASN][1000 genomes]
rs6536434	1.00[ASN][1000 genomes]
rs6811450	0.96[ASN][1000 genomes]
rs6813593	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6824835	0.96[ASN][1000 genomes]
rs6848639	0.96[ASN][1000 genomes]
rs7442124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656693	0.84[ASN][1000 genomes]
rs7669190	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996381	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160424800-160427600	Enhancers	Fetal Brain Male	brain
3	chr4:160424800-160427800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:160425000-160428000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:160425600-160427600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:160426000-160430400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:160426200-160427600	Enhancers	Brain Germinal Matrix	brain
8	chr4:160426200-160428400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:160426800-160427600	Enhancers	HSMM	muscle
10	chr4:160427000-160427600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:160427000-160430400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:160427200-160430200	Weak transcription	NH-A	brain
13	chr4:160427400-160429800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:160427400-160430200	Weak transcription	Liver	Liver

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