Variant report

Variant	rs2851827
Chromosome Location	chr4:160410938-160410939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10004927	0.91[ASN][1000 genomes]
rs10028453	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10745247	0.83[ASN][1000 genomes]
rs13103079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13111914	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13114173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13150216	0.91[ASN][1000 genomes]
rs1893951	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707658	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2707671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2707691	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707703	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707707	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2707709	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707710	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707711	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707712	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707713	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2707714	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707718	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2707720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707724	0.87[ASN][1000 genomes]
rs2707725	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2707727	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851773	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851774	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851788	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851794	0.87[ASN][1000 genomes]
rs2851795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2851796	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2851797	0.87[ASN][1000 genomes]
rs2851798	0.87[ASN][1000 genomes]
rs2851807	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851808	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851811	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2881905	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4305472	0.87[ASN][1000 genomes]
rs4428244	0.91[ASN][1000 genomes]
rs4453899	0.84[ASN][1000 genomes]
rs4473616	0.84[ASN][1000 genomes]
rs4504207	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4532192	0.87[ASN][1000 genomes]
rs4536880	0.87[ASN][1000 genomes]
rs4607165	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4629393	0.84[ASN][1000 genomes]
rs4690945	0.91[ASN][1000 genomes]
rs4691570	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691575	0.87[ASN][1000 genomes]
rs6536434	0.91[ASN][1000 genomes]
rs6811450	0.87[ASN][1000 genomes]
rs6813593	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824835	0.87[ASN][1000 genomes]
rs6848639	0.88[ASN][1000 genomes]
rs7442124	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7669190	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9995589	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9996381	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160406200-160412800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160408800-160412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:160409000-160412600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:160409800-160411800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:160410400-160411400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links