Variant report

Variant	rs4428244
Chromosome Location	chr4:160436826-160436827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160436569..160439453-chr4:160441304..160443977,2	K562	blood:
2	chr4:160431538..160433520-chr4:160436575..160439009,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004927	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10028453	1.00[ASN][1000 genomes]
rs10745247	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13103079	0.93[ASN][1000 genomes]
rs13111914	0.96[ASN][1000 genomes]
rs13114173	1.00[ASN][1000 genomes]
rs13150216	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893951	1.00[ASN][1000 genomes]
rs2707658	0.89[ASN][1000 genomes]
rs2707671	0.95[ASN][1000 genomes]
rs2707672	0.93[ASN][1000 genomes]
rs2707691	0.87[ASN][1000 genomes]
rs2707702	0.91[ASN][1000 genomes]
rs2707703	1.00[ASN][1000 genomes]
rs2707707	1.00[ASN][1000 genomes]
rs2707709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2707710	0.93[ASN][1000 genomes]
rs2707711	0.93[ASN][1000 genomes]
rs2707712	0.93[ASN][1000 genomes]
rs2707713	0.89[ASN][1000 genomes]
rs2707714	0.93[ASN][1000 genomes]
rs2707716	0.93[ASN][1000 genomes]
rs2707718	0.96[ASN][1000 genomes]
rs2707720	0.91[ASN][1000 genomes]
rs2707724	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707725	0.96[ASN][1000 genomes]
rs2707727	0.89[ASN][1000 genomes]
rs2851773	1.00[ASN][1000 genomes]
rs2851774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2851787	0.98[ASN][1000 genomes]
rs2851788	1.00[ASN][1000 genomes]
rs2851794	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851795	0.96[ASN][1000 genomes]
rs2851796	0.96[ASN][1000 genomes]
rs2851797	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851798	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851807	0.86[ASN][1000 genomes]
rs2851808	0.86[ASN][1000 genomes]
rs2851811	0.89[ASN][1000 genomes]
rs2851825	0.89[ASN][1000 genomes]
rs2851827	0.91[ASN][1000 genomes]
rs2851828	0.91[ASN][1000 genomes]
rs2851832	0.95[ASN][1000 genomes]
rs2881905	1.00[ASN][1000 genomes]
rs4305472	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4349554	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4453899	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4473616	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4504207	1.00[ASN][1000 genomes]
rs4532192	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4536880	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4607165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4629393	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4690945	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691570	0.85[ASN][1000 genomes]
rs4691575	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6536434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811450	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6813593	0.87[ASN][1000 genomes]
rs6824835	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6848639	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7442124	1.00[ASN][1000 genomes]
rs7656693	0.84[ASN][1000 genomes]
rs7669190	0.98[ASN][1000 genomes]
rs9995589	1.00[ASN][1000 genomes]
rs9996381	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160432400-160437400	Weak transcription	HSMM	muscle
2	chr4:160432600-160437000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:160433200-160458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160436800-160437600	Enhancers	Muscle Satellite Cultured Cells	--

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