Variant report

Variant	rs2707716
Chromosome Location	chr4:160462690-160462691
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10004927	0.93[ASN][1000 genomes]
rs10028453	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10745247	0.91[ASN][1000 genomes]
rs13103079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111914	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13150216	0.93[ASN][1000 genomes]
rs1893951	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707658	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2707671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2707672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2707691	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2707702	0.84[ASN][1000 genomes]
rs2707703	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707707	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2707709	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707718	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2707724	0.96[ASN][1000 genomes]
rs2707725	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707727	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2851773	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851788	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851794	0.96[ASN][1000 genomes]
rs2851795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851796	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851797	0.96[ASN][1000 genomes]
rs2851798	0.96[ASN][1000 genomes]
rs2851808	1.00[AFR][1000 genomes]
rs2851811	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2851825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2851827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2851828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2851832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2881905	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4305472	0.96[ASN][1000 genomes]
rs4349554	0.85[ASN][1000 genomes]
rs4428244	0.93[ASN][1000 genomes]
rs4453899	1.00[ASN][1000 genomes]
rs4473616	0.93[ASN][1000 genomes]
rs4504207	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4532192	0.96[ASN][1000 genomes]
rs4536880	0.96[ASN][1000 genomes]
rs4607165	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4629393	0.93[ASN][1000 genomes]
rs4690945	0.93[ASN][1000 genomes]
rs4691575	0.96[ASN][1000 genomes]
rs6536434	0.93[ASN][1000 genomes]
rs6811450	0.96[ASN][1000 genomes]
rs6813593	0.80[ASN][1000 genomes]
rs6824835	0.96[ASN][1000 genomes]
rs6848639	0.89[ASN][1000 genomes]
rs7442124	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7656693	0.84[ASN][1000 genomes]
rs7669190	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9995589	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9996381	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3344085	chr4:160462651-160463043	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160459600-160463600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:160460200-160463400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:160460200-160463600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:160460200-160468800	Weak transcription	HSMM	muscle
7	chr4:160460400-160463000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:160460400-160463600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:160460600-160463400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:160460600-160463800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:160461800-160462800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:160461800-160463000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:160462000-160463200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:160462000-160463400	Weak transcription	Pancreas	Pancrea
15	chr4:160462400-160463000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:160462600-160463200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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