Variant report

Variant	rs4453899
Chromosome Location	chr4:160464359-160464360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10004927	0.93[ASN][1000 genomes]
rs10028453	0.93[ASN][1000 genomes]
rs10745247	0.91[ASN][1000 genomes]
rs13103079	1.00[ASN][1000 genomes]
rs13111914	0.96[ASN][1000 genomes]
rs13114173	0.93[ASN][1000 genomes]
rs13150216	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893951	0.93[ASN][1000 genomes]
rs2707658	0.82[ASN][1000 genomes]
rs2707671	0.87[ASN][1000 genomes]
rs2707672	0.86[ASN][1000 genomes]
rs2707691	0.80[ASN][1000 genomes]
rs2707702	0.84[ASN][1000 genomes]
rs2707703	0.93[ASN][1000 genomes]
rs2707707	0.93[ASN][1000 genomes]
rs2707709	0.93[ASN][1000 genomes]
rs2707710	1.00[ASN][1000 genomes]
rs2707711	1.00[ASN][1000 genomes]
rs2707712	1.00[ASN][1000 genomes]
rs2707713	0.96[ASN][1000 genomes]
rs2707714	1.00[ASN][1000 genomes]
rs2707716	1.00[ASN][1000 genomes]
rs2707718	0.96[ASN][1000 genomes]
rs2707720	0.84[ASN][1000 genomes]
rs2707724	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707725	0.96[ASN][1000 genomes]
rs2707727	0.82[ASN][1000 genomes]
rs2851773	0.93[ASN][1000 genomes]
rs2851774	0.93[ASN][1000 genomes]
rs2851787	0.91[ASN][1000 genomes]
rs2851788	0.93[ASN][1000 genomes]
rs2851794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851795	0.96[ASN][1000 genomes]
rs2851796	0.96[ASN][1000 genomes]
rs2851797	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851798	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851811	0.82[ASN][1000 genomes]
rs2851825	0.82[ASN][1000 genomes]
rs2851827	0.84[ASN][1000 genomes]
rs2851828	0.84[ASN][1000 genomes]
rs2851832	0.87[ASN][1000 genomes]
rs2881905	0.93[ASN][1000 genomes]
rs4305472	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4349554	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4428244	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4473616	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4504207	0.93[ASN][1000 genomes]
rs4532192	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4536880	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4607165	0.93[ASN][1000 genomes]
rs4629393	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4690945	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691575	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6536434	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6811450	0.96[ASN][1000 genomes]
rs6813593	0.80[ASN][1000 genomes]
rs6824835	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6848639	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7442124	0.93[ASN][1000 genomes]
rs7656693	0.84[ASN][1000 genomes]
rs7669190	0.91[ASN][1000 genomes]
rs9995589	0.93[ASN][1000 genomes]
rs9996381	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160460200-160468800	Weak transcription	HSMM	muscle
4	chr4:160464000-160465800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160464200-160465000	Enhancers	Pancreas	Pancrea

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