Variant report

Variant	rs28607349
Chromosome Location	chr14:70285945-70285946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70285152..70286103-chr14:70479962..70480998,5	MCF-7	breast:
2	chr14:70285025..70285958-chr14:70540373..70541349,3	MCF-7	breast:
3	chr14:70232960..70234581-chr14:70285525..70287129,2	K562	blood:
4	chr14:70284835..70286537-chr14:70493931..70495236,17	MCF-7	breast:
5	chr14:70285196..70286164-chr14:70479768..70480661,3	MCF-7	breast:
6	chr14:70285510..70286099-chr14:70540409..70541333,2	K562	blood:
7	chr14:70284942..70286124-chr14:70494176..70496165,29	MCF-7	breast:
8	chr14:70284132..70286001-chr14:70493432..70495092,2	MCF-7	breast:
9	chr14:70285653..70287364-chr14:70317276..70318842,2	MCF-7	breast:
10	chr14:70284087..70286942-chr14:70495674..70497567,4	MCF-7	breast:
11	chr14:70285209..70286076-chr14:70512433..70513309,3	MCF-7	breast:
12	chr14:70285591..70287548-chr14:70492500..70494063,2	K562	blood:
13	chr14:70284953..70286076-chr14:70493863..70495399,6	K562	blood:
14	chr14:70285530..70286121-chr14:70724141..70724832,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10134553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151549	1.00[EUR][1000 genomes]
rs10450925	1.00[ASN][1000 genomes]
rs12896497	1.00[ASN][1000 genomes]
rs17107278	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332166	1.00[EUR][1000 genomes]
rs56203918	1.00[ASN][1000 genomes]
rs73283334	1.00[ASN][1000 genomes]
rs73285246	1.00[ASN][1000 genomes]
rs73285258	1.00[ASN][1000 genomes]
rs73285283	1.00[ASN][1000 genomes]
rs8014019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:70283600-70286000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:70284200-70288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:70285000-70286800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70285200-70286000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:70285200-70286200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:70285200-70286400	Enhancers	HepG2	liver
8	chr14:70285200-70286600	Enhancers	Hela-S3	cervix
9	chr14:70285200-70287000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:70285400-70286800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:70285800-70286000	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links