Variant report

Variant	rs28643436
Chromosome Location	chr15:72487443-72487444
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72484916..72487444-chr15:72490191..72493716,4	MCF-7	breast:
2	chr15:72487407..72489902-chr15:72490450..72492521,2	K562	blood:
3	chr15:72481643..72483870-chr15:72486883..72488513,2	K562	blood:
4	chr15:72485044..72488486-chr15:72520625..72523876,6	MCF-7	breast:
5	chr15:72484816..72489111-chr15:72521467..72525337,7	MCF-7	breast:
6	chr15:72487347..72489902-chr15:72491021..72493729,2	K562	blood:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs13329116	1.00[AMR][1000 genomes]
rs13329270	1.00[AMR][1000 genomes]
rs13329340	1.00[AMR][1000 genomes]
rs28367264	1.00[AMR][1000 genomes]
rs28373432	1.00[AMR][1000 genomes]
rs28378260	1.00[AMR][1000 genomes]
rs28379334	1.00[AMR][1000 genomes]
rs28393460	1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397237	1.00[AMR][1000 genomes]
rs28403882	1.00[AMR][1000 genomes]
rs28408067	1.00[AMR][1000 genomes]
rs28428645	1.00[AMR][1000 genomes]
rs28429589	1.00[AMR][1000 genomes]
rs28448787	1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	1.00[AMR][1000 genomes]
rs28451732	1.00[AMR][1000 genomes]
rs28455090	1.00[AMR][1000 genomes]
rs28456991	1.00[AMR][1000 genomes]
rs28470660	1.00[AMR][1000 genomes]
rs28482979	1.00[AMR][1000 genomes]
rs28483934	1.00[AMR][1000 genomes]
rs28504509	1.00[AMR][1000 genomes]
rs28529658	1.00[AMR][1000 genomes]
rs28536592	1.00[AMR][1000 genomes]
rs28542557	1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28553452	1.00[AMR][1000 genomes]
rs28569017	1.00[AMR][1000 genomes]
rs28573725	1.00[AMR][1000 genomes]
rs28583168	1.00[AMR][1000 genomes]
rs28589979	1.00[AMR][1000 genomes]
rs28605814	1.00[AMR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	1.00[AMR][1000 genomes]
rs28634283	1.00[AMR][1000 genomes]
rs28636054	1.00[AMR][1000 genomes]
rs28639590	1.00[AMR][1000 genomes]
rs28642081	1.00[AMR][1000 genomes]
rs28654851	1.00[AMR][1000 genomes]
rs28654861	1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28658414	1.00[AMR][1000 genomes]
rs28660217	1.00[AMR][1000 genomes]
rs28660581	1.00[AMR][1000 genomes]
rs28663692	1.00[AMR][1000 genomes]
rs28667521	1.00[AMR][1000 genomes]
rs28675378	1.00[AMR][1000 genomes]
rs28701136	1.00[AMR][1000 genomes]
rs28707151	1.00[AMR][1000 genomes]
rs28707565	1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28727443	1.00[AMR][1000 genomes]
rs28741048	1.00[AMR][1000 genomes]
rs28786091	1.00[AMR][1000 genomes]
rs28791192	1.00[AMR][1000 genomes]
rs28801155	1.00[AMR][1000 genomes]
rs28808678	1.00[AMR][1000 genomes]
rs28824293	1.00[AMR][1000 genomes]
rs28830268	1.00[AMR][1000 genomes]
rs28833566	1.00[AMR][1000 genomes]
rs28853032	1.00[AMR][1000 genomes]
rs28872877	1.00[AMR][1000 genomes]
rs28879707	1.00[AMR][1000 genomes]
rs8192372	1.00[AMR][1000 genomes]
rs9920204	1.00[AMR][1000 genomes]
rs9920223	1.00[AMR][1000 genomes]
rs9920987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72477000-72487800	Weak transcription	Esophagus	oesophagus
2	chr15:72477000-72489400	Weak transcription	Right Atrium	heart
3	chr15:72483400-72489000	Weak transcription	Fetal Intestine Small	intestine
4	chr15:72485200-72487600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:72485200-72489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:72485200-72489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:72485200-72489000	Enhancers	Placenta	Placenta
8	chr15:72485200-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:72485200-72490400	Weak transcription	A549	lung
10	chr15:72485200-72490400	Weak transcription	HSMM	muscle
11	chr15:72485600-72489000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:72486600-72487600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:72486600-72488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:72486600-72489000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72487000-72489000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:72487200-72487600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr15:72487200-72487600	Enhancers	NHEK	skin
18	chr15:72487200-72487800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:72487200-72487800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:72487200-72487800	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:72487200-72488000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:72487200-72488600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr15:72487200-72489000	Enhancers	HMEC	breast
24	chr15:72487400-72487600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
25	chr15:72487400-72487600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr15:72487400-72487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:72487400-72487800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr15:72487400-72487800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr15:72487400-72487800	Enhancers	Hela-S3	cervix
30	chr15:72487400-72488000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
31	chr15:72487400-72488000	Enhancers	Primary B cells from cord blood	blood
32	chr15:72487400-72488000	Enhancers	Primary hematopoietic stem cells	blood
33	chr15:72487400-72488000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr15:72487400-72488000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:72487400-72488000	Enhancers	K562	blood
36	chr15:72487400-72488800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:72487400-72489000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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