Variant report

Variant	rs28456991
Chromosome Location	chr15:72437077-72437078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs13329116	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28378260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	1.00[AMR][1000 genomes]
rs28393460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	1.00[AMR][1000 genomes]
rs28408067	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428645	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507982	0.81[AFR][1000 genomes]
rs28514321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	1.00[AMR][1000 genomes]
rs28536592	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28553452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569017	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	1.00[AMR][1000 genomes]
rs28625307	0.82[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	1.00[AMR][1000 genomes]
rs28643436	1.00[AMR][1000 genomes]
rs28643497	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28658414	1.00[AMR][1000 genomes]
rs28660217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667521	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	1.00[AMR][1000 genomes]
rs28709937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28727443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	0.82[AFR][1000 genomes]
rs28786091	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	1.00[AMR][1000 genomes]
rs28801155	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	0.82[AFR][1000 genomes]
rs28824293	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28830268	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	1.00[AMR][1000 genomes]
rs28879707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8192372	1.00[AMR][1000 genomes]
rs9920204	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72428400-72440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72428400-72447400	Weak transcription	Pancreas	Pancrea
3	chr15:72429800-72445800	Weak transcription	Fetal Brain Female	brain
4	chr15:72430000-72447200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:72430400-72439200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:72430600-72439600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:72430600-72447400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:72431400-72447600	Weak transcription	Spleen	Spleen
9	chr15:72432400-72439000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:72432600-72438200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:72432600-72439200	Weak transcription	Brain Angular Gyrus	brain
12	chr15:72432600-72445600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:72433000-72439200	Weak transcription	Brain Germinal Matrix	brain
14	chr15:72434400-72447400	Weak transcription	HSMM	muscle
15	chr15:72435000-72439800	Weak transcription	Fetal Kidney	kidney
16	chr15:72436400-72437400	Weak transcription	Aorta	Aorta

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