Variant report

Variant	rs28450008
Chromosome Location	chr15:72308231-72308232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72296226..72298848-chr15:72307966..72310000,2	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11072334	1.00[AMR][1000 genomes]
rs12101366	1.00[AMR][1000 genomes]
rs12101856	1.00[AMR][1000 genomes]
rs12102227	1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	1.00[AMR][1000 genomes]
rs13329270	1.00[AMR][1000 genomes]
rs13329340	1.00[AMR][1000 genomes]
rs28367264	1.00[AMR][1000 genomes]
rs28373432	1.00[AMR][1000 genomes]
rs28378260	1.00[AMR][1000 genomes]
rs28379334	1.00[AMR][1000 genomes]
rs28393460	1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397143	1.00[AMR][1000 genomes]
rs28397237	1.00[AMR][1000 genomes]
rs28397783	1.00[AMR][1000 genomes]
rs28403882	1.00[AMR][1000 genomes]
rs28408067	1.00[AMR][1000 genomes]
rs28409864	1.00[AMR][1000 genomes]
rs28412105	1.00[AMR][1000 genomes]
rs28413902	1.00[AMR][1000 genomes]
rs28416103	1.00[AMR][1000 genomes]
rs28421817	1.00[AMR][1000 genomes]
rs28428645	1.00[AMR][1000 genomes]
rs28429589	1.00[AMR][1000 genomes]
rs28430988	1.00[AMR][1000 genomes]
rs28445807	1.00[AMR][1000 genomes]
rs28448787	1.00[AMR][1000 genomes]
rs28449356	1.00[AMR][1000 genomes]
rs28450424	1.00[AMR][1000 genomes]
rs28451732	1.00[AMR][1000 genomes]
rs28455090	1.00[AMR][1000 genomes]
rs28456991	1.00[AMR][1000 genomes]
rs28465335	1.00[AMR][1000 genomes]
rs28470660	1.00[AMR][1000 genomes]
rs28482979	1.00[AMR][1000 genomes]
rs28483934	1.00[AMR][1000 genomes]
rs28485920	1.00[AMR][1000 genomes]
rs28501562	1.00[AMR][1000 genomes]
rs28502516	1.00[AMR][1000 genomes]
rs28504509	1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	1.00[AMR][1000 genomes]
rs28515972	1.00[AMR][1000 genomes]
rs28529658	1.00[AMR][1000 genomes]
rs28535954	1.00[AMR][1000 genomes]
rs28536592	1.00[AMR][1000 genomes]
rs28542557	1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28553452	1.00[AMR][1000 genomes]
rs28569017	1.00[AMR][1000 genomes]
rs28570214	1.00[AMR][1000 genomes]
rs28573725	1.00[AMR][1000 genomes]
rs28578220	1.00[AMR][1000 genomes]
rs28583168	1.00[AMR][1000 genomes]
rs28589979	1.00[AMR][1000 genomes]
rs28599944	1.00[AMR][1000 genomes]
rs28605814	1.00[AMR][1000 genomes]
rs28618096	1.00[AMR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	1.00[AMR][1000 genomes]
rs28630701	1.00[AMR][1000 genomes]
rs28634283	1.00[AMR][1000 genomes]
rs28636054	1.00[AMR][1000 genomes]
rs28639590	1.00[AMR][1000 genomes]
rs28642081	1.00[AMR][1000 genomes]
rs28643436	1.00[AMR][1000 genomes]
rs28643497	1.00[AMR][1000 genomes]
rs28654176	1.00[AMR][1000 genomes]
rs28654851	1.00[AMR][1000 genomes]
rs28654861	1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28658414	1.00[AMR][1000 genomes]
rs28660217	1.00[AMR][1000 genomes]
rs28660581	1.00[AMR][1000 genomes]
rs28662800	1.00[AMR][1000 genomes]
rs28663692	1.00[AMR][1000 genomes]
rs28667521	1.00[AMR][1000 genomes]
rs28670261	1.00[AMR][1000 genomes]
rs28675378	1.00[AMR][1000 genomes]
rs28676909	1.00[AMR][1000 genomes]
rs28681225	1.00[AMR][1000 genomes]
rs28690018	1.00[AMR][1000 genomes]
rs28701136	1.00[AMR][1000 genomes]
rs28705696	1.00[AMR][1000 genomes]
rs28707151	1.00[AMR][1000 genomes]
rs28707565	1.00[AMR][1000 genomes]
rs28709937	1.00[AMR][1000 genomes]
rs28715777	1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	1.00[AMR][1000 genomes]
rs28727443	1.00[AMR][1000 genomes]
rs28741048	1.00[AMR][1000 genomes]
rs28786091	1.00[AMR][1000 genomes]
rs28791192	1.00[AMR][1000 genomes]
rs28801155	1.00[AMR][1000 genomes]
rs28808678	1.00[AMR][1000 genomes]
rs28809863	1.00[AMR][1000 genomes]
rs28812537	1.00[AMR][1000 genomes]
rs28824293	1.00[AMR][1000 genomes]
rs28830268	1.00[AMR][1000 genomes]
rs28833566	1.00[AMR][1000 genomes]
rs28853032	1.00[AMR][1000 genomes]
rs28872877	1.00[AMR][1000 genomes]
rs28879707	1.00[AMR][1000 genomes]
rs8192372	1.00[AMR][1000 genomes]
rs9888653	1.00[AMR][1000 genomes]
rs9920204	1.00[AMR][1000 genomes]
rs9920223	1.00[AMR][1000 genomes]
rs9920476	1.00[AMR][1000 genomes]
rs9920987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv457200	chr15:72261385-72325595	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv569914	chr15:72261385-72325595	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
12	nsv569916	chr15:72268986-72325595	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv457201	chr15:72284647-72329906	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv569917	chr15:72284647-72329906	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
3	chr15:72261000-72326200	Weak transcription	NH-A	brain
4	chr15:72266400-72323000	Weak transcription	Lung	lung
5	chr15:72266600-72315000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:72268600-72313200	Weak transcription	HMEC	breast
7	chr15:72272000-72323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:72277200-72325800	Weak transcription	Fetal Heart	heart
9	chr15:72280200-72338800	Weak transcription	Hela-S3	cervix
10	chr15:72280800-72318200	Weak transcription	Pancreas	Pancrea
11	chr15:72282000-72311200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:72282200-72314200	Weak transcription	NHEK	skin
14	chr15:72282200-72337800	Weak transcription	Esophagus	oesophagus
15	chr15:72282200-72338800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:72282400-72325800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:72282400-72326200	Weak transcription	Fetal Brain Female	brain
18	chr15:72282400-72329000	Weak transcription	Brain Germinal Matrix	brain
19	chr15:72282600-72315800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:72282600-72332000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:72282800-72323000	Weak transcription	Thymus	Thymus
22	chr15:72282800-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:72283000-72309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:72283600-72329600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:72284200-72326400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:72288400-72314800	Strong transcription	Placenta	Placenta
29	chr15:72289200-72337800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:72290000-72316600	Weak transcription	Fetal Stomach	stomach
31	chr15:72291000-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:72291800-72323200	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:72292200-72338200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:72292400-72326000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:72295400-72337800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:72297600-72314000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
38	chr15:72298600-72315000	Weak transcription	Fetal Intestine Small	intestine
39	chr15:72298800-72325400	Weak transcription	Left Ventricle	heart
40	chr15:72299400-72315600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:72299400-72325600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:72299400-72326000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:72299400-72329000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:72299600-72312400	Weak transcription	Dnd41	blood
45	chr15:72299600-72329600	Weak transcription	Primary B cells from cord blood	blood
46	chr15:72299800-72309400	Weak transcription	Osteobl	bone
47	chr15:72299800-72313600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:72299800-72321600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:72300000-72309400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:72300000-72311000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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