Variant report

Variant	rs28515972
Chromosome Location	chr15:72144389-72144390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11072334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101366	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397143	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397237	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408067	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409017	0.81[AFR][1000 genomes]
rs28409864	1.00[AMR][1000 genomes]
rs28412105	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413902	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416103	1.00[AMR][1000 genomes]
rs28421817	1.00[AMR][1000 genomes]
rs28428645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430988	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449356	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28465335	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485920	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502516	1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535954	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536592	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548453	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28569017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578220	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599944	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618096	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625307	0.81[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28630701	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28643497	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	1.00[AMR][1000 genomes]
rs28660217	1.00[AMR][1000 genomes]
rs28662800	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670261	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676909	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28681225	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690018	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705696	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709937	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	0.81[AFR][1000 genomes]
rs28786091	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	1.00[AMR][1000 genomes]
rs28801155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	0.81[AFR][1000 genomes]
rs28824293	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28830268	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9888653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920204	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920476	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72115800-72147000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:72116400-72147000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:72119200-72171800	Weak transcription	Psoas Muscle	Psoas
5	chr15:72120600-72147400	Weak transcription	Small Intestine	intestine
6	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
7	chr15:72122400-72195000	Weak transcription	NHEK	skin
8	chr15:72122600-72144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:72122600-72145600	Weak transcription	Thymus	Thymus
10	chr15:72122600-72171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:72122600-72185200	Weak transcription	Esophagus	oesophagus
12	chr15:72122600-72195800	Weak transcription	Gastric	stomach
13	chr15:72124800-72145800	Weak transcription	Fetal Heart	heart
14	chr15:72129200-72148000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72131200-72148200	Strong transcription	Placenta	Placenta
16	chr15:72131600-72147000	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:72132000-72145000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:72134000-72149000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:72135200-72146600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:72135200-72147600	Strong transcription	Primary T cells from cord blood	blood
22	chr15:72136200-72148400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:72136200-72148400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:72136200-72149000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:72136400-72145600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr15:72136400-72147000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:72136400-72147000	Strong transcription	Adipose Nuclei	Adipose
28	chr15:72136400-72148400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:72136600-72146600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr15:72136800-72146400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:72136800-72146400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:72136800-72147000	Strong transcription	Primary B cells from cord blood	blood
33	chr15:72137000-72156400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:72137600-72144400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:72137800-72146000	Strong transcription	Fetal Lung	lung
36	chr15:72137800-72147000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr15:72138200-72146200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:72138200-72172400	Weak transcription	HUVEC	blood vessel
39	chr15:72138400-72144600	Strong transcription	Colon Smooth Muscle	Colon
40	chr15:72138400-72145800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:72138400-72146200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:72138400-72146200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:72138400-72146400	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:72138400-72146600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:72138400-72147000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:72138600-72146200	Strong transcription	Left Ventricle	heart
47	chr15:72138600-72147000	Strong transcription	Liver	Liver
48	chr15:72138800-72146200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:72138800-72146800	Weak transcription	K562	blood
50	chr15:72139000-72145600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links