Variant report

Variant	rs28643497
Chromosome Location	chr15:72224930-72224931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11072334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28378260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28393460	1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409017	1.00[AFR][1000 genomes]
rs28409864	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28456991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28465335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504509	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28553452	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625307	1.00[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654851	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28660217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28681225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	1.00[AFR][1000 genomes]
rs28786091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	1.00[AFR][1000 genomes]
rs28824293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28830268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9888653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv457197	chr15:72203517-72296328	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv569910	chr15:72203517-72296328	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv569911	chr15:72203517-72305982	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72191200-72229600	Weak transcription	HUVEC	blood vessel
2	chr15:72192400-72241200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:72192400-72249400	Weak transcription	NHLF	lung
4	chr15:72193800-72232000	Weak transcription	Fetal Heart	heart
5	chr15:72214000-72226800	Weak transcription	NHEK	skin
6	chr15:72219200-72232600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:72219200-72239000	Weak transcription	Aorta	Aorta
8	chr15:72221400-72226800	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr15:72221600-72225400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:72221800-72228200	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:72222000-72225800	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr15:72222000-72227000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:72222000-72227800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:72222200-72232400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:72222400-72225000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:72222400-72225000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72222400-72225200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr15:72222400-72225600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr15:72222400-72225800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:72222400-72226800	Strong transcription	Placenta	Placenta
21	chr15:72222600-72225200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:72222600-72226200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr15:72222600-72227400	Weak transcription	Fetal Brain Male	brain
24	chr15:72222600-72228800	Strong transcription	NHDF-Ad	bronchial
25	chr15:72222800-72225000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr15:72222800-72225000	ZNF genes & repeats	Liver	Liver
27	chr15:72222800-72225200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:72222800-72225200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
29	chr15:72222800-72225200	ZNF genes & repeats	Fetal Brain Female	brain
30	chr15:72222800-72225200	ZNF genes & repeats	Fetal Lung	lung
31	chr15:72222800-72226800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:72223000-72225000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:72223000-72225000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr15:72223000-72225000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr15:72223000-72225000	Strong transcription	Rectal Smooth Muscle	rectum
36	chr15:72223000-72225000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr15:72223000-72225200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr15:72223000-72225200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr15:72223000-72225400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:72223000-72225800	Strong transcription	Brain Germinal Matrix	brain
41	chr15:72223000-72226200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:72223200-72225000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:72223200-72225200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:72223200-72225200	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr15:72223400-72225000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr15:72223400-72225000	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr15:72223400-72225000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
48	chr15:72223400-72225000	ZNF genes & repeats	NH-A	brain
49	chr15:72223400-72225200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:72223400-72225200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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