Variant report

Variant	rs28670261
Chromosome Location	chr15:72201095-72201096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11072334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28378260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409017	1.00[AFR][1000 genomes]
rs28409864	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28456991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28465335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504509	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28569017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625307	1.00[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28643497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28660217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28681225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	1.00[AFR][1000 genomes]
rs28786091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	1.00[AFR][1000 genomes]
rs28824293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28830268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9888653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
3	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:72190800-72203800	Weak transcription	HMEC	breast
5	chr15:72190800-72206400	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:72191000-72222800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:72191200-72206000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:72191200-72206000	Weak transcription	Ovary	ovary
9	chr15:72191200-72229600	Weak transcription	HUVEC	blood vessel
10	chr15:72191600-72208000	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:72192400-72203000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:72192400-72205000	Weak transcription	GM12878-XiMat	blood
13	chr15:72192400-72208600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:72192400-72216000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:72192400-72218400	Weak transcription	Esophagus	oesophagus
16	chr15:72192400-72218400	Weak transcription	Lung	lung
17	chr15:72192400-72218600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:72192400-72218800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:72192400-72222800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:72192400-72223400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:72192400-72223400	Weak transcription	NH-A	brain
22	chr15:72192400-72223600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:72192400-72224000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:72192400-72241200	Weak transcription	Brain Angular Gyrus	brain
25	chr15:72192400-72249400	Weak transcription	NHLF	lung
26	chr15:72193800-72218400	Weak transcription	Aorta	Aorta
27	chr15:72193800-72224600	Weak transcription	Thymus	Thymus
28	chr15:72193800-72232000	Weak transcription	Fetal Heart	heart
29	chr15:72194000-72202200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:72194000-72203400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:72194000-72218400	Weak transcription	Pancreas	Pancrea
32	chr15:72194200-72206000	Weak transcription	Fetal Brain Female	brain
33	chr15:72194200-72206200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:72194200-72206800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:72194200-72210200	Weak transcription	Dnd41	blood
36	chr15:72194200-72218600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:72194200-72223400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:72194200-72223400	Weak transcription	HSMMtube	muscle
39	chr15:72194200-72224400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr15:72194400-72201400	Weak transcription	Primary B cells from cord blood	blood
41	chr15:72194600-72223000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:72195400-72222800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:72196000-72201200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:72196200-72222200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:72196600-72217000	Weak transcription	Fetal Stomach	stomach
46	chr15:72196600-72223000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:72196800-72205400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr15:72196800-72206000	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:72196800-72206200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:72196800-72206200	Weak transcription	Stomach Smooth Muscle	stomach

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