Variant report

Variant	rs28824293
Chromosome Location	chr15:72375073-72375074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11072334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28378260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28393460	1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409017	1.00[AFR][1000 genomes]
rs28409864	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28456991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504509	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28553452	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625307	1.00[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28643436	1.00[AMR][1000 genomes]
rs28643497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654851	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28658414	1.00[AMR][1000 genomes]
rs28660217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660581	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667521	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28681225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	1.00[AFR][1000 genomes]
rs28786091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	1.00[AFR][1000 genomes]
rs28830268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8192372	1.00[AMR][1000 genomes]
rs9888653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904337	chr15:72361942-72390515	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv869747	chr15:72372245-72403103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
12	nsv510665	chr15:72374862-72407548	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
3	chr15:72354000-72378400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:72355800-72376200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:72361600-72377400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:72361600-72390600	Weak transcription	Aorta	Aorta
7	chr15:72361600-72391400	Weak transcription	Ovary	ovary
8	chr15:72367200-72407600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:72367800-72377400	Weak transcription	Fetal Stomach	stomach
10	chr15:72370000-72378400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:72370800-72378600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:72371200-72377400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:72371400-72376800	Weak transcription	Fetal Brain Female	brain
14	chr15:72371400-72379600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:72372200-72378000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:72372200-72399400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:72373600-72378400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:72373600-72394400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:72374000-72375400	Enhancers	HSMMtube	muscle
20	chr15:72374400-72375400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:72374600-72375200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:72374800-72375400	Enhancers	Psoas Muscle	Psoas
23	chr15:72375000-72379400	Weak transcription	Right Ventricle	heart
24	chr15:72375000-72408200	Weak transcription	Primary B cells from cord blood	blood

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