Variant report

Variant	rs28413902
Chromosome Location	chr15:72173704-72173705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11072334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12102227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12372924	1.00[AMR][1000 genomes]
rs13329116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28367264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28378260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396234	1.00[AMR][1000 genomes]
rs28397143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409017	1.00[AFR][1000 genomes]
rs28409864	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450008	1.00[AMR][1000 genomes]
rs28450424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28465335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28501562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504990	1.00[AMR][1000 genomes]
rs28514321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543029	1.00[AMR][1000 genomes]
rs28547979	1.00[AMR][1000 genomes]
rs28548453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552371	1.00[AMR][1000 genomes]
rs28569017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625307	1.00[AFR][1000 genomes]
rs28628140	1.00[AMR][1000 genomes]
rs28628792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28643497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654861	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657431	1.00[AMR][1000 genomes]
rs28660217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28681225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725348	1.00[AMR][1000 genomes]
rs28725466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28741048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28778881	1.00[AFR][1000 genomes]
rs28786091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28791192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817677	1.00[AFR][1000 genomes]
rs28824293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28830268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28872877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9888653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
3	chr15:72122400-72195000	Weak transcription	NHEK	skin
4	chr15:72122600-72185200	Weak transcription	Esophagus	oesophagus
5	chr15:72122600-72195800	Weak transcription	Gastric	stomach
6	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:72141400-72174200	Weak transcription	Fetal Brain Male	brain
8	chr15:72142600-72183400	Weak transcription	Brain Angular Gyrus	brain
9	chr15:72142600-72189600	Weak transcription	NHLF	lung
10	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
11	chr15:72142800-72176000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:72142800-72184800	Weak transcription	A549	lung
13	chr15:72142800-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:72143000-72190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:72143000-72190600	Weak transcription	Colonic Mucosa	Colon
16	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:72145400-72190600	Weak transcription	Spleen	Spleen
18	chr15:72145600-72182800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:72145600-72184800	Weak transcription	Lung	lung
20	chr15:72149200-72186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:72152800-72174400	Weak transcription	HSMMtube	muscle
22	chr15:72153000-72174600	Weak transcription	Fetal Kidney	kidney
23	chr15:72153200-72189600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:72160800-72177000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:72161000-72174400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
27	chr15:72162600-72187600	Strong transcription	Placenta	Placenta
28	chr15:72164000-72190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72164000-72190600	Weak transcription	Aorta	Aorta
30	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:72165400-72190800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:72166200-72181800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:72166800-72175600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:72167000-72197800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:72167200-72175400	Weak transcription	GM12878-XiMat	blood
36	chr15:72167600-72181600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:72168400-72176000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr15:72168800-72176600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:72168800-72180400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:72168800-72190800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:72169000-72180400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:72169600-72176000	Strong transcription	Fetal Lung	lung
43	chr15:72169600-72176000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:72169800-72174000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:72169800-72175000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:72169800-72176000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:72169800-72176000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:72169800-72176200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:72169800-72176200	Strong transcription	Osteobl	bone
50	chr15:72170000-72176000	Strong transcription	Fetal Brain Female	brain

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