Variant report

Variant	rs28650966
Chromosome Location	chr7:137922964-137922965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10266565	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28691233	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137905800-137928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:137915000-137931800	Weak transcription	Right Atrium	heart
3	chr7:137920400-137923200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:137921800-137929400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:137922600-137923200	Enhancers	HepG2	liver
6	chr7:137922600-137923800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr7:137922600-137924400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr7:137922600-137924600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr7:137922800-137923000	Active TSS	Liver	Liver
10	chr7:137922800-137924400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr7:137922800-137925000	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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