Variant report

Variant	rs2881771
Chromosome Location	chr3:16951650-16951651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025818	0.85[ASN][1000 genomes]
rs10865746	0.81[JPT][hapmap]
rs11128810	0.85[ASN][1000 genomes]
rs1156336	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11926952	0.83[JPT][hapmap]
rs11928330	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11928414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12233492	0.86[JPT][hapmap]
rs12487288	0.81[JPT][hapmap]
rs12497667	0.83[JPT][hapmap]
rs13058764	0.81[JPT][hapmap]
rs13080108	0.82[JPT][hapmap]
rs1372072	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441035	0.86[JPT][hapmap]
rs17272796	0.86[JPT][hapmap]
rs1806556	0.86[JPT][hapmap]
rs2014490	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3924971	0.83[JPT][hapmap]
rs4334629	0.85[JPT][hapmap]
rs4353792	0.82[JPT][hapmap]
rs4461404	0.86[JPT][hapmap]
rs4472039	0.82[JPT][hapmap]
rs4535211	0.86[JPT][hapmap]
rs4602367	0.83[JPT][hapmap]
rs4618210	0.81[JPT][hapmap]
rs4685400	0.81[EUR][1000 genomes]
rs4685403	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4685404	0.82[JPT][hapmap]
rs4685405	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4685409	0.86[JPT][hapmap]
rs4685426	0.82[JPT][hapmap]
rs6442660	0.83[JPT][hapmap]
rs6762816	0.86[JPT][hapmap]
rs6780191	0.86[JPT][hapmap]
rs6783752	0.82[EUR][1000 genomes]
rs6799397	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6809087	0.86[JPT][hapmap]
rs7611127	0.86[JPT][hapmap]
rs7612044	0.82[JPT][hapmap]
rs7617672	0.83[JPT][hapmap]
rs7629676	0.81[EUR][1000 genomes]
rs7637568	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7653027	0.86[JPT][hapmap]
rs9810017	0.83[JPT][hapmap]
rs9824172	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs9830460	0.86[JPT][hapmap]
rs983545	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9841259	0.86[JPT][hapmap]
rs9854760	0.85[JPT][hapmap]
rs9862613	0.90[JPT][hapmap]
rs9872237	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9876137	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9879150	0.81[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes]
rs9880307	0.86[JPT][hapmap]
rs9882937	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9883633	0.84[JPT][hapmap];0.89[AMR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16931200-16952400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:16940800-16954200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:16940800-16962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:16941800-16959400	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:16942800-16952000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:16943200-16952200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:16943600-16952600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:16943800-16954200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:16945600-16951800	Enhancers	Fetal Heart	heart
10	chr3:16946200-16959000	Weak transcription	Aorta	Aorta
11	chr3:16948000-16952400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:16949000-16952200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:16949000-16952400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:16949000-16952600	Weak transcription	Fetal Stomach	stomach
15	chr3:16949000-16953200	Weak transcription	NHDF-Ad	bronchial
16	chr3:16949000-16965400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:16949200-16952200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:16949200-16952200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:16949200-16952200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:16949200-16952400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:16949200-16953400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:16949200-16953800	Weak transcription	Liver	Liver
23	chr3:16949200-16953800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:16949200-16954000	Weak transcription	Small Intestine	intestine
25	chr3:16949200-16954200	Weak transcription	Fetal Thymus	thymus
26	chr3:16949200-16954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:16949200-16954400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:16949200-16954400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:16949200-16958400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:16949200-16958400	Weak transcription	Adipose Nuclei	Adipose
31	chr3:16949200-16958400	Weak transcription	Gastric	stomach
32	chr3:16949200-16958800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:16949200-16961200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:16949400-16953000	Enhancers	GM12878-XiMat	blood
35	chr3:16949400-16958400	Weak transcription	Stomach Mucosa	stomach
36	chr3:16949800-16958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:16950000-16958600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:16950200-16951800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:16950200-16953000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:16950200-16957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:16950800-16953200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr3:16951000-16953000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr3:16951000-16953000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:16951000-16953200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:16951200-16951800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr3:16951200-16952400	Weak transcription	Primary B cells from cord blood	blood
47	chr3:16951400-16951800	Enhancers	Brain Germinal Matrix	brain
48	chr3:16951400-16952000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:16951400-16952000	Enhancers	Fetal Brain Male	brain
50	chr3:16951400-16952000	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links