Variant report

Variant	rs7637568
Chromosome Location	chr3:16965216-16965217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025818	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865746	0.85[JPT][hapmap]
rs11128810	0.91[ASN][1000 genomes]
rs1156336	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11926952	0.86[JPT][hapmap]
rs11928330	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11928414	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12233492	0.90[JPT][hapmap]
rs12487288	0.86[JPT][hapmap]
rs12497667	0.86[JPT][hapmap]
rs13058764	0.85[JPT][hapmap]
rs13080108	0.86[JPT][hapmap]
rs1372072	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1441035	0.85[JPT][hapmap]
rs17272796	0.85[JPT][hapmap]
rs2014490	0.80[JPT][hapmap]
rs2197017	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2881771	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3924971	0.86[JPT][hapmap]
rs4334629	0.85[JPT][hapmap]
rs4353792	0.86[JPT][hapmap]
rs4461404	0.85[JPT][hapmap]
rs4472039	0.86[JPT][hapmap]
rs4535211	0.85[JPT][hapmap]
rs4602367	0.86[JPT][hapmap]
rs4618210	0.81[JPT][hapmap]
rs4685403	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4685404	0.86[JPT][hapmap]
rs4685405	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs4685409	0.85[JPT][hapmap]
rs4685418	0.81[JPT][hapmap]
rs4685426	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs4685427	0.82[JPT][hapmap]
rs6442660	0.86[JPT][hapmap]
rs6762816	0.85[JPT][hapmap]
rs6780191	0.85[JPT][hapmap]
rs6799397	0.85[ASN][1000 genomes]
rs6809087	0.85[JPT][hapmap]
rs7611127	0.85[JPT][hapmap]
rs7612044	0.86[JPT][hapmap]
rs7617672	0.86[JPT][hapmap]
rs7653027	0.85[JPT][hapmap]
rs9810017	0.86[JPT][hapmap]
rs9824172	0.80[JPT][hapmap]
rs9830460	0.81[JPT][hapmap]
rs983545	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9841259	0.81[JPT][hapmap]
rs9854760	0.90[JPT][hapmap]
rs9862613	0.84[JPT][hapmap]
rs9872237	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9876137	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9879150	0.84[CEU][hapmap];0.80[JPT][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs9880307	0.85[JPT][hapmap]
rs9881521	0.82[JPT][hapmap]
rs9882937	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883633	0.91[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16949000-16965400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:16951800-16969200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:16954800-16965400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:16955000-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:16958000-16981800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:16959400-16969000	Weak transcription	Psoas Muscle	Psoas
7	chr3:16959400-16986600	Weak transcription	Aorta	Aorta
8	chr3:16960200-16969200	Weak transcription	Small Intestine	intestine
9	chr3:16961000-16968600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:16961600-16965800	Weak transcription	Primary B cells from cord blood	blood
11	chr3:16961800-16965800	Weak transcription	Liver	Liver
12	chr3:16962200-16965400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:16962200-16965400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:16962400-16965400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:16962600-16965600	Weak transcription	Primary T cells from cord blood	blood
16	chr3:16963000-16965600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:16963000-16965800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:16963000-16965800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:16963000-16966800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:16963200-16969200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:16964000-16965400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:16964000-16969200	Weak transcription	Fetal Heart	heart
23	chr3:16964600-16965800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:16964600-16965800	ZNF genes & repeats	GM12878-XiMat	blood
25	chr3:16964800-16965400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr3:16964800-16967800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr3:16965000-16966000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:16965000-16966000	Weak transcription	Left Ventricle	heart
29	chr3:16965000-16968200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:16965000-16969200	Weak transcription	Pancreas	Pancrea
31	chr3:16965000-16969200	Weak transcription	Spleen	Spleen
32	chr3:16965000-16969400	Weak transcription	Ovary	ovary
33	chr3:16965000-16979000	Weak transcription	Lung	lung
34	chr3:16965200-16965600	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:16965200-16966200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:16965200-16966400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:16965200-16967000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:16965200-16967000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:16965200-16967800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:16965200-16968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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