Variant report

Variant	rs2884429
Chromosome Location	chr10:19424694-19424695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10763873	0.83[EUR][1000 genomes]
rs10763874	0.88[ASN][1000 genomes]
rs10763880	0.80[ASN][1000 genomes]
rs10826990	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10826991	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10826993	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826994	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10826996	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826998	0.83[EUR][1000 genomes]
rs10826999	0.95[EUR][1000 genomes]
rs10827012	0.81[ASN][1000 genomes]
rs10827019	0.81[ASN][1000 genomes]
rs11008619	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11008638	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11008639	0.91[EUR][1000 genomes]
rs11008821	0.80[ASN][1000 genomes]
rs12243775	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12245697	0.80[ASN][1000 genomes]
rs12245761	0.80[ASN][1000 genomes]
rs12247241	0.80[ASN][1000 genomes]
rs12247413	0.80[ASN][1000 genomes]
rs12250261	0.87[ASN][1000 genomes]
rs12250525	0.80[ASN][1000 genomes]
rs12252395	0.80[ASN][1000 genomes]
rs12257317	0.86[ASN][1000 genomes]
rs12267424	0.80[ASN][1000 genomes]
rs12570472	0.89[ASN][1000 genomes]
rs12570966	0.89[ASN][1000 genomes]
rs12573164	0.81[ASN][1000 genomes]
rs12773103	0.83[EUR][1000 genomes]
rs12775323	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12779141	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12783745	0.90[ASN][1000 genomes]
rs16918302	0.95[EUR][1000 genomes]
rs2358338	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2358339	0.95[EUR][1000 genomes]
rs2358340	0.94[EUR][1000 genomes]
rs2358341	0.89[ASN][1000 genomes]
rs34129683	0.85[ASN][1000 genomes]
rs34280396	0.83[EUR][1000 genomes]
rs34398776	0.89[ASN][1000 genomes]
rs34724539	0.81[ASN][1000 genomes]
rs36013652	0.86[ASN][1000 genomes]
rs4445549	0.94[EUR][1000 genomes]
rs4472834	0.92[EUR][1000 genomes]
rs4477351	0.83[EUR][1000 genomes]
rs4491125	0.95[EUR][1000 genomes]
rs4607972	0.94[EUR][1000 genomes]
rs4748559	0.81[ASN][1000 genomes]
rs58095759	0.95[EUR][1000 genomes]
rs6481761	0.95[EUR][1000 genomes]
rs6481762	0.95[EUR][1000 genomes]
rs6481763	0.95[EUR][1000 genomes]
rs6481764	0.94[EUR][1000 genomes]
rs67664564	0.82[EUR][1000 genomes]
rs7070317	0.81[ASN][1000 genomes]
rs7080208	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7081937	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7092998	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7093764	0.89[EUR][1000 genomes]
rs7098738	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71472841	0.89[EUR][1000 genomes]
rs7477457	0.95[EUR][1000 genomes]
rs7896381	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896771	0.87[ASN][1000 genomes]
rs7898234	0.92[EUR][1000 genomes]
rs7906085	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7913024	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv948242	chr10:19401696-19428561	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19414800-19434800	Weak transcription	Small Intestine	intestine
2	chr10:19419400-19425600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19423600-19425600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:19424600-19425000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links