Variant report

Variant	rs2947490
Chromosome Location	chr15:41456701-41456702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41456615..41459900-chr15:41462571..41464669,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXD1-1	chr15:41455961-41456708	XLOC_011447

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2918464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947487	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2955809	0.89[AFR][1000 genomes]
rs36124939	1.00[AMR][1000 genomes]
rs558339	0.91[YRI][hapmap]
rs55838056	1.00[AMR][1000 genomes]
rs56140669	1.00[AMR][1000 genomes]
rs56687496	1.00[AMR][1000 genomes]
rs57958502	1.00[AMR][1000 genomes]
rs58165973	1.00[AMR][1000 genomes]
rs58218403	1.00[AMR][1000 genomes]
rs59034095	1.00[AMR][1000 genomes]
rs59073406	1.00[AMR][1000 genomes]
rs59343255	1.00[AMR][1000 genomes]
rs59659337	1.00[AMR][1000 genomes]
rs59850482	1.00[AMR][1000 genomes]
rs61602493	1.00[AMR][1000 genomes]
rs691098	0.92[YRI][hapmap]
rs692377	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164797	1.00[EUR][1000 genomes]
rs7168916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012258	1.00[AMR][1000 genomes]
rs74012259	1.00[AMR][1000 genomes]
rs74012263	1.00[AMR][1000 genomes]
rs74012264	1.00[AMR][1000 genomes]
rs8025218	1.00[AMR][1000 genomes]
rs8029815	1.00[AMR][1000 genomes]
rs8032010	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032335	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035341	1.00[AMR][1000 genomes]
rs8038086	1.00[AMR][1000 genomes]
rs8038185	1.00[AMR][1000 genomes]
rs8041170	1.00[AMR][1000 genomes]
rs9745301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv984056	chr15:41455583-41457693	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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