Variant report

Variant	rs7168916
Chromosome Location	chr15:41483640-41483641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41483506-41483996	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41045965..41048868-chr15:41482776..41485356,2	K562	blood:

Variant related genes	Relation type
EXD1	TF binding region
ENSG00000137824	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2918464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36124939	1.00[AMR][1000 genomes]
rs558339	0.86[AFR][1000 genomes]
rs55838056	1.00[AMR][1000 genomes]
rs56140669	1.00[AMR][1000 genomes]
rs56687496	1.00[AMR][1000 genomes]
rs57958502	1.00[AMR][1000 genomes]
rs58165973	1.00[AMR][1000 genomes]
rs58218403	1.00[AMR][1000 genomes]
rs59034095	1.00[AMR][1000 genomes]
rs59073406	1.00[AMR][1000 genomes]
rs59343255	1.00[AMR][1000 genomes]
rs59659337	1.00[AMR][1000 genomes]
rs59850482	1.00[AMR][1000 genomes]
rs61602493	1.00[AMR][1000 genomes]
rs692377	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164797	1.00[EUR][1000 genomes]
rs7172892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012258	1.00[AMR][1000 genomes]
rs74012259	1.00[AMR][1000 genomes]
rs74012263	1.00[AMR][1000 genomes]
rs74012264	1.00[AMR][1000 genomes]
rs8025218	1.00[AMR][1000 genomes]
rs8029815	1.00[AMR][1000 genomes]
rs8032010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035341	1.00[AMR][1000 genomes]
rs8038086	1.00[AMR][1000 genomes]
rs8038185	1.00[AMR][1000 genomes]
rs8041170	1.00[AMR][1000 genomes]
rs9745301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1039906	chr15:41476209-41518976	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41483600-41484400	Enhancers	Colon Smooth Muscle	Colon

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