Variant report
| Variant | rs8032335 |
|---|---|
| Chromosome Location | chr15:41519313-41519314 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:41511538..41514696-chr15:41517185..41519800,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CHP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs16971432 | 1.00[TSI][hapmap] |
| rs2918464 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2947487 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2947490 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36124939 | 1.00[AMR][1000 genomes] |
| rs558339 | 0.82[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs55838056 | 1.00[AMR][1000 genomes] |
| rs56140669 | 1.00[AMR][1000 genomes] |
| rs56687496 | 1.00[AMR][1000 genomes] |
| rs57958502 | 1.00[AMR][1000 genomes] |
| rs58165973 | 1.00[AMR][1000 genomes] |
| rs58218403 | 1.00[AMR][1000 genomes] |
| rs59034095 | 1.00[AMR][1000 genomes] |
| rs59073406 | 1.00[AMR][1000 genomes] |
| rs59343255 | 1.00[AMR][1000 genomes] |
| rs59659337 | 1.00[AMR][1000 genomes] |
| rs59850482 | 1.00[AMR][1000 genomes] |
| rs61602493 | 1.00[AMR][1000 genomes] |
| rs691098 | 1.00[YRI][hapmap] |
| rs692377 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7164797 | 1.00[EUR][1000 genomes] |
| rs7168916 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7172892 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74012258 | 1.00[AMR][1000 genomes] |
| rs74012259 | 1.00[AMR][1000 genomes] |
| rs74012263 | 1.00[AMR][1000 genomes] |
| rs74012264 | 1.00[AMR][1000 genomes] |
| rs8025218 | 1.00[AMR][1000 genomes] |
| rs8029815 | 1.00[AMR][1000 genomes] |
| rs8032010 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8035341 | 1.00[AMR][1000 genomes] |
| rs8038086 | 1.00[AMR][1000 genomes] |
| rs8038185 | 1.00[AMR][1000 genomes] |
| rs8041170 | 1.00[AMR][1000 genomes] |
| rs9745301 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv457120 | chr15:41410705-41546631 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv569231 | chr15:41410705-41546631 | Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv1844058 | chr15:41511916-41548948 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:41511600-41522800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
