Variant report

Variant	rs8032010
Chromosome Location	chr15:41454155-41454156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:41453126-41454332	SK-N-SH	brain:	n/a	chr15:41454099-41454109 chr15:41454101-41454108 chr15:41454099-41454108 chr15:41454090-41454107 chr15:41454101-41454108 chr15:41454101-41454111 chr15:41454101-41454108
2	STAT3	chr15:41452976-41454321	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361
3	STAT3	chr15:41452957-41454323	MCF10A-Er-Src	breast:	n/a	chr15:41453337-41453346 chr15:41453335-41453349 chr15:41453338-41453347 chr15:41453338-41453361
4	PBX3	chr15:41453116-41454274	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr15:41453054-41454377	SK-N-SH	brain:	n/a	chr15:41454099-41454109 chr15:41454101-41454108 chr15:41454099-41454108 chr15:41454090-41454107 chr15:41454101-41454108 chr15:41454101-41454111 chr15:41454101-41454108

Variant related genes	Relation type
FAM92A1P1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2918464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2955809	0.87[AFR][1000 genomes]
rs36124939	1.00[AMR][1000 genomes]
rs558339	0.90[YRI][hapmap]
rs55838056	1.00[AMR][1000 genomes]
rs56140669	1.00[AMR][1000 genomes]
rs56687496	1.00[AMR][1000 genomes]
rs57958502	1.00[AMR][1000 genomes]
rs58165973	1.00[AMR][1000 genomes]
rs58218403	1.00[AMR][1000 genomes]
rs59034095	1.00[AMR][1000 genomes]
rs59073406	1.00[AMR][1000 genomes]
rs59343255	1.00[AMR][1000 genomes]
rs59659337	1.00[AMR][1000 genomes]
rs59850482	1.00[AMR][1000 genomes]
rs61602493	1.00[AMR][1000 genomes]
rs691098	0.90[YRI][hapmap]
rs692377	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164797	1.00[EUR][1000 genomes]
rs7168916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012258	1.00[AMR][1000 genomes]
rs74012259	1.00[AMR][1000 genomes]
rs74012263	1.00[AMR][1000 genomes]
rs74012264	1.00[AMR][1000 genomes]
rs8025218	1.00[AMR][1000 genomes]
rs8029815	1.00[AMR][1000 genomes]
rs8032335	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035341	1.00[AMR][1000 genomes]
rs8038086	1.00[AMR][1000 genomes]
rs8038185	1.00[AMR][1000 genomes]
rs8041170	1.00[AMR][1000 genomes]
rs9745301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41452600-41454400	Enhancers	Hela-S3	cervix
2	chr15:41452600-41454800	Enhancers	Osteobl	bone
3	chr15:41452600-41455400	Enhancers	NHLF	lung
4	chr15:41453000-41454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:41453000-41454600	Enhancers	A549	lung
6	chr15:41453200-41454200	Enhancers	NHDF-Ad	bronchial
7	chr15:41453200-41454400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:41453200-41454400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:41453400-41454400	Weak transcription	Pancreas	Pancrea
10	chr15:41453600-41454600	Enhancers	HUVEC	blood vessel
11	chr15:41453800-41454400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:41453800-41454600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:41453800-41454600	Enhancers	NH-A	brain
14	chr15:41454000-41454200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:41454000-41454200	Enhancers	HSMM	muscle
16	chr15:41454000-41454800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:41454000-41454800	Enhancers	Dnd41	blood

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