Variant report

Variant	rs8025218
Chromosome Location	chr15:41578345-41578346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41577922..41579765-chr15:41608421..41610575,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC012652.1.1-1	chr15:41578209-41578632	ENSG00000247556.2
2	lnc-OIP5-1	chr15:41578207-41578584	XLOC_011448

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2918464	1.00[AMR][1000 genomes]
rs2947487	1.00[AMR][1000 genomes]
rs2947490	1.00[AMR][1000 genomes]
rs34979001	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs35123814	0.84[AFR][1000 genomes]
rs36124939	1.00[ASW][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs55838056	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56140669	1.00[AMR][1000 genomes]
rs56687496	1.00[AMR][1000 genomes]
rs57958502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58165973	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58218403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59034095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59073406	1.00[AMR][1000 genomes]
rs59343255	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59659337	1.00[AMR][1000 genomes]
rs59850482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61602493	1.00[AMR][1000 genomes]
rs692377	1.00[AMR][1000 genomes]
rs7166617	1.00[YRI][hapmap]
rs7168916	1.00[AMR][1000 genomes]
rs7171744	1.00[YRI][hapmap]
rs7172892	1.00[AMR][1000 genomes]
rs74012258	1.00[AMR][1000 genomes]
rs74012259	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012263	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012264	1.00[AMR][1000 genomes]
rs8029815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031243	1.00[ASW][hapmap];0.89[YRI][hapmap]
rs8032010	1.00[AMR][1000 genomes]
rs8032335	1.00[AMR][1000 genomes]
rs8035341	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037253	1.00[YRI][hapmap]
rs8038086	1.00[AMR][1000 genomes]
rs8038185	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs8039556	1.00[YRI][hapmap]
rs8039815	0.82[AFR][1000 genomes]
rs8041170	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9745301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41575400-41578400	Active TSS	Fetal Brain Female	brain
2	chr15:41576400-41578400	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr15:41577000-41582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:41577200-41578400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:41577200-41578400	Enhancers	Small Intestine	intestine
6	chr15:41577400-41578400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr15:41577400-41584600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:41577600-41579200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:41577600-41579800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:41577600-41580000	Genic enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:41577600-41581200	Genic enhancers	Primary B cells from cord blood	blood
13	chr15:41577600-41581200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:41577600-41581200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
16	chr15:41577800-41578400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:41577800-41578400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:41577800-41578400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:41577800-41578600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:41577800-41578600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:41577800-41578600	Weak transcription	Lung	lung
22	chr15:41577800-41578800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:41577800-41578800	Genic enhancers	Fetal Muscle Leg	muscle
24	chr15:41577800-41578800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:41577800-41579000	Weak transcription	NHLF	lung
26	chr15:41577800-41579200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:41577800-41579200	Weak transcription	Gastric	stomach
28	chr15:41577800-41579200	Genic enhancers	HSMM	muscle
29	chr15:41577800-41579400	Weak transcription	Psoas Muscle	Psoas
30	chr15:41577800-41579400	Weak transcription	Thymus	Thymus
31	chr15:41577800-41579800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr15:41577800-41579800	Strong transcription	Left Ventricle	heart
33	chr15:41577800-41580400	Weak transcription	Spleen	Spleen
34	chr15:41577800-41580600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr15:41577800-41581200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:41577800-41581200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
37	chr15:41577800-41581600	Strong transcription	Placenta	Placenta
38	chr15:41577800-41581800	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr15:41577800-41583600	Weak transcription	Aorta	Aorta
40	chr15:41577800-41583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:41577800-41589000	Weak transcription	Esophagus	oesophagus
42	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr15:41578000-41578400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:41578000-41578400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:41578000-41578400	Genic enhancers	Duodenum Mucosa	Duodenum
46	chr15:41578000-41578400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:41578000-41578600	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:41578000-41578600	Enhancers	Primary hematopoietic stem cells	blood
49	chr15:41578000-41578600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:41578000-41578600	Strong transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links