Variant report

Variant	rs8035341
Chromosome Location	chr15:41609698-41609699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41577922..41579765-chr15:41608421..41610575,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2918464	1.00[AMR][1000 genomes]
rs2947487	1.00[AMR][1000 genomes]
rs2947490	1.00[AMR][1000 genomes]
rs35123814	0.98[AFR][1000 genomes]
rs36124939	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55643943	0.82[AFR][1000 genomes]
rs55838056	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56140669	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56687496	1.00[AMR][1000 genomes]
rs57958502	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58165973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58218403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59034095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59073406	1.00[AMR][1000 genomes]
rs59343255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59659337	1.00[AMR][1000 genomes]
rs59850482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61602493	1.00[AMR][1000 genomes]
rs692377	1.00[AMR][1000 genomes]
rs7162242	0.80[AFR][1000 genomes]
rs7168916	1.00[AMR][1000 genomes]
rs7172892	1.00[AMR][1000 genomes]
rs74012258	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012264	1.00[AMR][1000 genomes]
rs74012273	0.85[AFR][1000 genomes]
rs74012275	0.86[AFR][1000 genomes]
rs74012276	0.91[AFR][1000 genomes]
rs8025218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028208	0.91[AFR][1000 genomes]
rs8029815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032010	1.00[AMR][1000 genomes]
rs8032335	1.00[AMR][1000 genomes]
rs8038086	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038185	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039815	0.91[AFR][1000 genomes]
rs8041170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9745301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	esv14767	chr15:41595813-41619355	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv977843	chr15:41608625-41625613	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:41579200-41612400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41581200-41623600	Weak transcription	Fetal Brain Male	brain
4	chr15:41581400-41610400	Weak transcription	NHLF	lung
5	chr15:41581600-41623600	Weak transcription	Fetal Kidney	kidney
6	chr15:41583200-41623600	Weak transcription	HSMM	muscle
7	chr15:41583800-41613000	Weak transcription	Right Ventricle	heart
8	chr15:41585600-41623600	Weak transcription	Primary B cells from cord blood	blood
9	chr15:41587600-41623000	Weak transcription	NHEK	skin
10	chr15:41589600-41624000	Weak transcription	Esophagus	oesophagus
11	chr15:41590200-41623600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:41590600-41623000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:41590800-41623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:41591200-41623800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:41591200-41624000	Weak transcription	HSMMtube	muscle
16	chr15:41591600-41611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:41591600-41623200	Weak transcription	HUVEC	blood vessel
18	chr15:41591800-41624000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:41592000-41618400	Weak transcription	Fetal Brain Female	brain
20	chr15:41592400-41623000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:41592400-41623200	Weak transcription	Osteobl	bone
22	chr15:41592400-41624000	Weak transcription	Brain Angular Gyrus	brain
23	chr15:41592600-41610600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:41592600-41612400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:41592600-41623800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:41592800-41612400	Weak transcription	Fetal Intestine Large	intestine
27	chr15:41592800-41613200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:41593600-41623800	Weak transcription	NH-A	brain
29	chr15:41596800-41610400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:41597200-41623000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:41597200-41623000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:41599600-41611400	Strong transcription	Fetal Thymus	thymus
33	chr15:41599800-41612200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:41600600-41623600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:41602400-41623000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:41602400-41623600	Weak transcription	NHDF-Ad	bronchial
37	chr15:41603200-41610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:41603200-41613200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:41603400-41614000	Weak transcription	Primary T cells from cord blood	blood
40	chr15:41603400-41618600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:41603400-41622800	Weak transcription	HepG2	liver
42	chr15:41603400-41623000	Weak transcription	Brain Germinal Matrix	brain
43	chr15:41603400-41623400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:41603600-41612200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:41603600-41618600	Weak transcription	A549	lung
46	chr15:41603800-41615000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:41603800-41623600	Weak transcription	Fetal Lung	lung
48	chr15:41604000-41610200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:41604000-41623200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:41604200-41624000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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