Variant report

Variant	rs2972984
Chromosome Location	chr5:96873781-96873782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11135520	0.86[EUR][1000 genomes]
rs11957034	0.86[EUR][1000 genomes]
rs11958000	0.86[EUR][1000 genomes]
rs11958735	0.86[EUR][1000 genomes]
rs11958753	0.86[EUR][1000 genomes]
rs11958897	0.86[EUR][1000 genomes]
rs11959303	0.86[EUR][1000 genomes]
rs11960434	0.86[EUR][1000 genomes]
rs12153467	0.86[EUR][1000 genomes]
rs12153708	0.86[EUR][1000 genomes]
rs12651707	0.86[EUR][1000 genomes]
rs12652654	0.86[EUR][1000 genomes]
rs12653049	0.86[EUR][1000 genomes]
rs12653090	0.86[EUR][1000 genomes]
rs12653530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653533	0.86[EUR][1000 genomes]
rs12653789	0.86[EUR][1000 genomes]
rs12654248	0.86[EUR][1000 genomes]
rs12654249	0.86[EUR][1000 genomes]
rs12654570	0.86[EUR][1000 genomes]
rs12654904	0.86[EUR][1000 genomes]
rs12655664	0.86[EUR][1000 genomes]
rs12656998	0.86[EUR][1000 genomes]
rs12657000	0.86[EUR][1000 genomes]
rs12657405	0.86[EUR][1000 genomes]
rs4370300	0.86[EUR][1000 genomes]
rs4370301	0.86[EUR][1000 genomes]
rs4371782	0.86[EUR][1000 genomes]
rs4499855	0.86[EUR][1000 genomes]
rs4565234	0.86[EUR][1000 genomes]
rs4591774	0.86[EUR][1000 genomes]
rs4869169	0.86[EUR][1000 genomes]
rs4869170	0.86[EUR][1000 genomes]
rs4869171	0.86[EUR][1000 genomes]
rs4869172	0.86[EUR][1000 genomes]
rs4869362	0.86[EUR][1000 genomes]
rs4869363	0.86[EUR][1000 genomes]
rs4869365	0.84[EUR][1000 genomes]
rs4869366	0.86[EUR][1000 genomes]
rs4869367	0.86[EUR][1000 genomes]
rs4869368	0.86[EUR][1000 genomes]
rs4869369	0.86[EUR][1000 genomes]
rs4869370	0.86[EUR][1000 genomes]
rs5009275	0.86[EUR][1000 genomes]
rs56159846	0.86[EUR][1000 genomes]
rs56313483	0.86[EUR][1000 genomes]
rs57093667	0.86[EUR][1000 genomes]
rs58789574	0.86[EUR][1000 genomes]
rs58960401	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59482420	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60521916	0.86[EUR][1000 genomes]
rs60859704	0.86[EUR][1000 genomes]
rs61120732	0.86[EUR][1000 genomes]
rs6866014	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6879692	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72766393	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72766401	0.86[EUR][1000 genomes]
rs72768204	0.84[EUR][1000 genomes]
rs72768207	0.86[EUR][1000 genomes]
rs72768209	0.86[EUR][1000 genomes]
rs72768210	0.86[EUR][1000 genomes]
rs72768213	0.86[EUR][1000 genomes]
rs72768215	0.86[EUR][1000 genomes]
rs72768216	0.86[EUR][1000 genomes]
rs72768217	0.86[EUR][1000 genomes]
rs72768218	0.86[EUR][1000 genomes]
rs72768220	0.86[EUR][1000 genomes]
rs72768222	0.86[EUR][1000 genomes]
rs72768223	0.86[EUR][1000 genomes]
rs72768233	0.86[EUR][1000 genomes]
rs72768239	0.84[EUR][1000 genomes]
rs72768240	0.86[EUR][1000 genomes]
rs72768242	0.86[EUR][1000 genomes]
rs72768248	0.83[EUR][1000 genomes]
rs72768249	0.86[EUR][1000 genomes]
rs72768250	0.86[EUR][1000 genomes]
rs72774085	0.86[EUR][1000 genomes]
rs72774086	0.86[EUR][1000 genomes]
rs72774088	0.86[EUR][1000 genomes]
rs72774094	0.86[EUR][1000 genomes]
rs72775904	0.86[EUR][1000 genomes]
rs72775906	0.86[EUR][1000 genomes]
rs72775909	0.86[EUR][1000 genomes]
rs72775911	0.86[EUR][1000 genomes]
rs72775913	0.86[EUR][1000 genomes]
rs72775914	0.86[EUR][1000 genomes]
rs72775917	0.86[EUR][1000 genomes]
rs72775919	0.86[EUR][1000 genomes]
rs72775920	0.86[EUR][1000 genomes]
rs72775921	0.86[EUR][1000 genomes]
rs72775922	0.86[EUR][1000 genomes]
rs72775924	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1022046	chr5:96757900-97046804	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1031429	chr5:96777286-97269498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv527650	chr5:96783726-97260358	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1028224	chr5:96791214-97258383	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv537814	chr5:96791214-97258383	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv830416	chr5:96817328-96958233	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv882396	chr5:96849023-97126520	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv882397	chr5:96856849-96991565	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv882398	chr5:96856849-97051163	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96870600-96881200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:96873400-96875200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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