Variant report

Variant	rs3109854
Chromosome Location	chr4:26461070-26461071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26460527..26461421-chr4:26721272..26722269,7	MCF-7	breast:
2	chr4:26460549..26461471-chr4:26721284..26722071,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1397729	0.93[AMR][1000 genomes]
rs1567545	0.93[AMR][1000 genomes]
rs2063448	0.93[AMR][1000 genomes]
rs2667063	0.93[AMR][1000 genomes]
rs2667064	0.93[AMR][1000 genomes]
rs2725321	0.93[AMR][1000 genomes]
rs2725326	0.93[AMR][1000 genomes]
rs2788855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788856	0.86[AMR][1000 genomes]
rs2788859	1.00[AMR][1000 genomes]
rs3109831	0.93[AMR][1000 genomes]
rs3109840	0.93[AMR][1000 genomes]
rs3109846	0.93[AMR][1000 genomes]
rs3109847	0.93[AMR][1000 genomes]
rs3109853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113014	0.93[AMR][1000 genomes]
rs3113027	0.93[AMR][1000 genomes]
rs3113028	1.00[AMR][1000 genomes]
rs3113030	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689471	0.93[AMR][1000 genomes]
rs907273	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878767	chr4:26451326-26463490	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv10468	chr4:26453879-26462957	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2757048	chr4:26456267-26461885	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2759237	chr4:26456267-26461885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26457400-26461200	Enhancers	Colon Smooth Muscle	Colon
2	chr4:26458000-26461200	Enhancers	Fetal Muscle Leg	muscle
3	chr4:26458000-26466000	Enhancers	Fetal Stomach	stomach
4	chr4:26458400-26461400	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:26458600-26461200	Enhancers	Primary T cells from cord blood	blood
6	chr4:26458600-26462000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:26458800-26461800	Enhancers	Fetal Thymus	thymus
8	chr4:26459000-26462000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:26459400-26461200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:26459400-26462000	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:26459600-26461200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:26460000-26461200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:26460000-26461400	Enhancers	HepG2	liver
14	chr4:26460200-26461400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:26460200-26461600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:26460200-26464800	Weak transcription	HSMMtube	muscle
17	chr4:26460400-26461400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:26460600-26461200	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:26460800-26461200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr4:26460800-26461400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:26460800-26461400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr4:26460800-26462000	Enhancers	NH-A	brain
23	chr4:26461000-26461200	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr4:26461000-26461200	Active TSS	NHDF-Ad	bronchial
25	chr4:26461000-26461400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr4:26461000-26461400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:26461000-26461400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:26461000-26461400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr4:26461000-26461400	Enhancers	Adipose Nuclei	Adipose
30	chr4:26461000-26461400	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr4:26461000-26461800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:26461000-26461800	Flanking Active TSS	Osteobl	bone
33	chr4:26461000-26462000	Enhancers	HSMM	muscle

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