Variant report

Variant	rs3113027
Chromosome Location	chr4:26440788-26440789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26438899..26441461-chr4:26443781..26447435,3	K562	blood:
2	chr4:26439953..26442346-chr4:27061840..27063686,2	K562	blood:
3	chr4:26439053..26441508-chr4:26443087..26445412,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1397729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1567545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725321	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725326	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788855	0.93[AMR][1000 genomes]
rs2788856	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788862	1.00[EUR][1000 genomes]
rs3109831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109846	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109847	1.00[AMR][1000 genomes]
rs3109853	0.93[AMR][1000 genomes]
rs3109854	0.93[AMR][1000 genomes]
rs3113014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113028	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113030	0.86[AMR][1000 genomes]
rs57899161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.86[AMR][1000 genomes]
rs7665261	0.85[AMR][1000 genomes]
rs7689471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv11028	chr4:26438714-26441364	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
2	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
3	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:26422200-26440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:26422200-26440800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
8	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
10	chr4:26424400-26440800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
13	chr4:26428800-26442600	Weak transcription	Pancreas	Pancrea
14	chr4:26429000-26442800	Weak transcription	Psoas Muscle	Psoas
15	chr4:26431800-26444400	Weak transcription	Gastric	stomach
16	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:26432400-26441600	Weak transcription	HUVEC	blood vessel
18	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:26432600-26442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:26432600-26442600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:26432600-26442800	Weak transcription	Esophagus	oesophagus
22	chr4:26432600-26442800	Weak transcription	Right Ventricle	heart
23	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr4:26432800-26442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:26433200-26440800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:26433800-26441800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:26433800-26444200	Weak transcription	HepG2	liver
30	chr4:26434400-26442600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:26434400-26443200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:26434600-26442800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:26434800-26442600	Weak transcription	Left Ventricle	heart
34	chr4:26434800-26442800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:26435000-26442800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr4:26435600-26441600	Weak transcription	Liver	Liver
37	chr4:26436200-26442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:26436200-26446000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:26436400-26442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:26436400-26442600	Weak transcription	Brain Angular Gyrus	brain
41	chr4:26436400-26442600	Weak transcription	Brain Substantia Nigra	brain
42	chr4:26436400-26445800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:26436600-26442000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:26436800-26441600	Strong transcription	Fetal Muscle Leg	muscle
46	chr4:26437200-26441400	Strong transcription	HSMM	muscle
47	chr4:26437600-26441400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr4:26437600-26441600	Strong transcription	NHDF-Ad	bronchial
49	chr4:26437800-26441200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:26437800-26441200	Strong transcription	Fetal Brain Female	brain

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