Variant report

Variant	rs3109846
Chromosome Location	chr4:26391951-26391952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26390209..26392373-chr4:26393968..26395750,2	K562	blood:
2	chr4:26321307..26323882-chr4:26391371..26393825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1397729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1567545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967281	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063448	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667064	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725326	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788855	0.93[AMR][1000 genomes]
rs2788856	0.90[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788862	1.00[EUR][1000 genomes]
rs3109831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109847	1.00[AMR][1000 genomes]
rs3109853	0.93[AMR][1000 genomes]
rs3109854	0.93[AMR][1000 genomes]
rs3113014	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113028	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113030	0.86[AMR][1000 genomes]
rs57899161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.86[AMR][1000 genomes]
rs7665261	0.85[AMR][1000 genomes]
rs7689471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26374600-26396800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
4	chr4:26374800-26392600	Weak transcription	Fetal Brain Male	brain
5	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:26375200-26406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
12	chr4:26375600-26404000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:26376800-26399800	Weak transcription	Lung	lung
14	chr4:26379200-26393400	Weak transcription	NHLF	lung
15	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
17	chr4:26379800-26392600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:26380000-26397800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:26380200-26396600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:26380200-26398400	Weak transcription	Brain Anterior Caudate	brain
21	chr4:26380400-26398200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:26381000-26403800	Weak transcription	Small Intestine	intestine
23	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
24	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
25	chr4:26383000-26398400	Weak transcription	Stomach Mucosa	stomach
26	chr4:26383200-26403800	Weak transcription	Fetal Heart	heart
27	chr4:26383400-26398000	Weak transcription	Brain Substantia Nigra	brain
28	chr4:26383400-26398200	Weak transcription	Brain Angular Gyrus	brain
29	chr4:26383400-26398200	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:26384600-26398200	Weak transcription	Ovary	ovary
31	chr4:26385200-26401800	Weak transcription	Fetal Brain Female	brain
32	chr4:26385600-26408000	Weak transcription	K562	blood
33	chr4:26386000-26392000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:26386200-26397800	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:26387000-26406400	Weak transcription	HSMMtube	muscle
37	chr4:26387000-26407800	Weak transcription	A549	lung
38	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr4:26387400-26398200	Strong transcription	HSMM	muscle
40	chr4:26387600-26392200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:26387600-26392200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:26387600-26396800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:26387600-26398800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:26387800-26392200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:26387800-26392200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:26387800-26393400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:26387800-26394400	Strong transcription	Placenta	Placenta
48	chr4:26387800-26395000	Strong transcription	NHDF-Ad	bronchial
49	chr4:26388200-26392200	Strong transcription	Adipose Nuclei	Adipose
50	chr4:26388200-26392400	Strong transcription	Muscle Satellite Cultured Cells	--

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