Variant report

Variant	rs3113014
Chromosome Location	chr4:26407878-26407879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1397729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1567545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063448	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725326	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788855	0.93[AMR][1000 genomes]
rs2788856	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788862	1.00[EUR][1000 genomes]
rs3109831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109846	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109847	1.00[AMR][1000 genomes]
rs3109853	0.93[AMR][1000 genomes]
rs3109854	0.93[AMR][1000 genomes]
rs3113027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113028	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113030	0.86[AMR][1000 genomes]
rs57899161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.86[AMR][1000 genomes]
rs7665261	0.85[AMR][1000 genomes]
rs7689471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
5	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
6	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
7	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
8	chr4:26385600-26408000	Weak transcription	K562	blood
9	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
13	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
17	chr4:26394000-26408000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:26395400-26408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:26397000-26408000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:26397000-26408000	Weak transcription	NHLF	lung
21	chr4:26397400-26408000	Weak transcription	Fetal Intestine Large	intestine
22	chr4:26399000-26408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:26399000-26408000	Weak transcription	Ovary	ovary
24	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:26400400-26408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:26400600-26408000	Weak transcription	Lung	lung
27	chr4:26400600-26408000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:26402800-26414600	Weak transcription	Pancreas	Pancrea
29	chr4:26403000-26408000	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:26403000-26411600	Weak transcription	Fetal Brain Male	brain
31	chr4:26403000-26424800	Weak transcription	Fetal Brain Female	brain
32	chr4:26403200-26408000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:26403200-26408000	Weak transcription	Brain Germinal Matrix	brain
34	chr4:26403200-26411600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:26404400-26408000	Weak transcription	Left Ventricle	heart
36	chr4:26404400-26414600	Weak transcription	Gastric	stomach
37	chr4:26404400-26436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:26404600-26413800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:26404600-26418000	Weak transcription	Small Intestine	intestine
40	chr4:26405000-26408000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:26405000-26409400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr4:26405200-26409800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:26405200-26409800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:26405400-26408800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr4:26406000-26408400	ZNF genes & repeats	Dnd41	blood
46	chr4:26406000-26409000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr4:26406000-26409400	ZNF genes & repeats	GM12878-XiMat	blood
48	chr4:26406000-26409600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:26406200-26408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:26406200-26408800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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