Variant report

Variant	rs3109840
Chromosome Location	chr4:26406823-26406824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1397729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1567545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725326	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788855	0.93[AMR][1000 genomes]
rs2788856	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788862	1.00[EUR][1000 genomes]
rs3109831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109847	1.00[AMR][1000 genomes]
rs3109853	0.93[AMR][1000 genomes]
rs3109854	0.93[AMR][1000 genomes]
rs3113014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113028	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113030	0.86[AMR][1000 genomes]
rs57899161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.86[AMR][1000 genomes]
rs7665261	0.85[AMR][1000 genomes]
rs7689471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
6	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
8	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
9	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
10	chr4:26385600-26408000	Weak transcription	K562	blood
11	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:26387000-26407800	Weak transcription	A549	lung
13	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:26390200-26407800	Weak transcription	Liver	Liver
15	chr4:26390400-26407800	Weak transcription	HepG2	liver
16	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
17	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:26390800-26407800	Weak transcription	HMEC	breast
21	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
23	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:26391400-26407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
28	chr4:26391600-26407600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:26391800-26407800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:26392600-26407400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:26393200-26407600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:26393800-26407600	Weak transcription	NH-A	brain
33	chr4:26394000-26408000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:26394400-26407800	Weak transcription	Placenta	Placenta
35	chr4:26394400-26407800	Weak transcription	NHEK	skin
36	chr4:26395400-26408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:26396800-26407800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:26397000-26408000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr4:26397000-26408000	Weak transcription	NHLF	lung
40	chr4:26397400-26407800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr4:26397400-26407800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:26397400-26407800	Weak transcription	Osteobl	bone
43	chr4:26397400-26408000	Weak transcription	Fetal Intestine Large	intestine
44	chr4:26398400-26407600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:26398600-26407800	Weak transcription	Adipose Nuclei	Adipose
46	chr4:26398800-26407800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:26398800-26407800	Weak transcription	Fetal Lung	lung
48	chr4:26399000-26407800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr4:26399000-26407800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:26399000-26407800	Weak transcription	Fetal Thymus	thymus

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