Variant report

Variant	rs2667064
Chromosome Location	chr4:26342939-26342940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26342923-26343126	HepG2	liver:	n/a	n/a
2	WRNIP1	chr4:26342851-26342969	GM12878	blood:	n/a	n/a
3	POLR2A	chr4:26342914-26343007	H1-hESC	embryonic stem cell:	n/a	n/a
4	TBP	chr4:26342865-26343117	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26328721..26330790-chr4:26341132..26343403,2	K562	blood:
2	chr4:26334111..26335661-chr4:26342183..26344127,2	MCF-7	breast:

Variant related genes	Relation type
RBPJ	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1397729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1567545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967281	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2667063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2725326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788855	0.93[AMR][1000 genomes]
rs2788856	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788862	1.00[EUR][1000 genomes]
rs3109831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109846	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3109847	1.00[AMR][1000 genomes]
rs3109853	0.93[AMR][1000 genomes]
rs3109854	0.93[AMR][1000 genomes]
rs3113014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113028	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3113030	0.86[AMR][1000 genomes]
rs57899161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856923	0.86[AMR][1000 genomes]
rs7665261	0.85[AMR][1000 genomes]
rs7689471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
5	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:26328800-26343600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:26329000-26343200	Weak transcription	HMEC	breast
8	chr4:26329000-26343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:26332400-26343600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:26332600-26343800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:26333000-26343200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:26333000-26343600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:26333000-26343600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:26333000-26343600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:26333000-26343600	Weak transcription	Fetal Brain Female	brain
16	chr4:26333400-26343000	Weak transcription	Pancreas	Pancrea
17	chr4:26333400-26343400	Weak transcription	Aorta	Aorta
18	chr4:26333400-26343600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:26333400-26343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:26333600-26343000	Weak transcription	Left Ventricle	heart
22	chr4:26333600-26343400	Weak transcription	Adipose Nuclei	Adipose
23	chr4:26333600-26343600	Weak transcription	Brain Germinal Matrix	brain
24	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:26333800-26343200	Weak transcription	Osteobl	bone
26	chr4:26334000-26343400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:26334000-26343400	Weak transcription	Brain Angular Gyrus	brain
28	chr4:26334000-26344600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:26334800-26343600	Weak transcription	Fetal Intestine Small	intestine
30	chr4:26336400-26343600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:26338200-26343600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:26339200-26343000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:26339400-26345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:26339600-26343400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:26340400-26343600	Weak transcription	Stomach Mucosa	stomach
36	chr4:26340400-26344400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:26341000-26343800	Enhancers	Brain Cingulate Gyrus	brain
38	chr4:26341400-26343200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr4:26341400-26343400	Enhancers	Brain Anterior Caudate	brain
40	chr4:26341400-26343400	Enhancers	Brain Hippocampus Middle	brain
41	chr4:26341400-26343600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr4:26341400-26344800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr4:26341400-26345200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:26341600-26343000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:26341600-26343600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:26341600-26344400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr4:26341600-26345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr4:26341800-26343000	Enhancers	H1 Cell Line	embryonic stem cell
49	chr4:26341800-26343200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:26341800-26343800	Enhancers	NHDF-Ad	bronchial

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